This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.9.5, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --with-netcdf --with-hdf5 --with-proj --with-szlib=/usr/local --with-grib_api=/usr/local/grib_api --with-fftw3 --with-curl --with-udunits --with-libxml2 --enable-all-static --disable-shared ## --------- ## ## Platform. ## ## --------- ## hostname = WPNSBIO9009864 uname -m = i686 uname -r = 2.0.4(0.287/5/3) uname -s = CYGWIN_NT-6.1-WOW uname -v = 2015-06-09 12:20 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/bin PATH: /usr/bin PATH: /cygdrive/c/Program Files (x86)/Common Files/Oracle/Java/javapath PATH: /cygdrive/c/Oracle/11.2.0_x64/bin PATH: /cygdrive/c/Windows/system32 PATH: /cygdrive/c/Windows PATH: /cygdrive/c/Windows/System32/Wbem PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Program Files/MATLAB/R2012a/bin PATH: /cygdrive/c/Program Files (x86)/MATLAB/R2010bSP1/bin PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Users/DeTraceyB/AppData/Local/Continuum/Anaconda PATH: /cygdrive/c/Users/DeTraceyB/AppData/Local/Continuum/Anaconda/Scripts PATH: /usr/lib/lapack PATH: /usr/local/mpich2-1.4.1p1/bin PATH: /usr/local/grib_api/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2875: checking build system type configure:2889: result: i686-pc-cygwin configure:2909: checking host system type configure:2922: result: i686-pc-cygwin configure:2961: checking for a BSD-compatible install configure:3029: result: /usr/bin/install -c configure:3040: checking whether build environment is sane configure:3095: result: yes configure:3246: checking for a thread-safe mkdir -p configure:3285: result: /usr/bin/mkdir -p configure:3292: checking for gawk configure:3308: found /usr/bin/gawk configure:3319: result: gawk configure:3330: checking whether make sets $(MAKE) configure:3352: result: yes configure:3381: checking whether make supports nested variables configure:3398: result: yes configure:3527: checking whether to enable maintainer-specific portions of Makefiles configure:3536: result: no configure:3555: checking whether make supports the include directive configure:3570: make -f confmf.GNU && cat confinc.out this is the am__doit target configure:3573: $? = 0 configure:3592: result: yes (GNU style) configure:3662: checking for gcc configure:3678: found /usr/bin/gcc configure:3689: result: gcc configure:3918: checking for C compiler version configure:3927: gcc --version >&5 gcc (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3938: $? = 0 configure:3927: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.9.2/lto-wrapper.exe Target: i686-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.9.2 (GCC) configure:3938: $? = 0 configure:3927: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3938: $? = 1 configure:3927: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3938: $? = 1 configure:3958: checking whether the C compiler works configure:3980: gcc conftest.c >&5 configure:3984: $? = 0 configure:4032: result: yes configure:4035: checking for C compiler default output file name configure:4037: result: a.exe configure:4043: checking for suffix of executables configure:4050: gcc -o conftest.exe conftest.c >&5 configure:4054: $? = 0 configure:4076: result: .exe configure:4098: checking whether we are cross compiling configure:4106: gcc -o conftest.exe conftest.c >&5 configure:4110: $? = 0 configure:4117: ./conftest.exe configure:4121: $? = 0 configure:4136: result: no configure:4141: checking for suffix of object files configure:4163: gcc -c conftest.c >&5 configure:4167: $? = 0 configure:4188: result: o configure:4192: checking whether we are using the GNU C compiler configure:4211: gcc -c conftest.c >&5 configure:4211: $? = 0 configure:4220: result: yes configure:4229: checking whether gcc accepts -g configure:4249: gcc -c -g conftest.c >&5 configure:4249: $? = 0 configure:4290: result: yes configure:4307: checking for gcc option to accept ISO C89 configure:4370: gcc -c -g -O2 conftest.c >&5 configure:4370: $? = 0 configure:4383: result: none needed configure:4408: checking whether gcc understands -c and -o together configure:4430: gcc -c conftest.c -o conftest2.o configure:4433: $? = 0 configure:4430: gcc -c conftest.c -o conftest2.o configure:4433: $? = 0 configure:4445: result: yes configure:4464: checking dependency style of gcc configure:4575: result: gcc3 configure:4640: checking for ar configure:4656: found /usr/bin/ar configure:4667: result: ar configure:4693: checking the archiver (ar) interface configure:4709: gcc -c -g -O2 conftest.c >&5 configure:4709: $? = 0 configure:4711: ar cru libconftest.a conftest.o >&5 configure:4714: $? = 0 configure:4742: result: ar configure:4763: setting up libtool configure:4811: checking how to print strings configure:4838: result: printf configure:4859: checking for a sed that does not truncate output configure:4923: result: /usr/bin/sed configure:4941: checking for grep that handles long lines and -e configure:4999: result: /usr/bin/grep configure:5004: checking for egrep configure:5066: result: /usr/bin/grep -E configure:5071: checking for fgrep configure:5133: result: /usr/bin/grep -F configure:5168: checking for ld used by gcc configure:5235: result: /usr/i686-pc-cygwin/bin/ld.exe configure:5242: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld configure:5257: result: yes configure:5269: checking for BSD- or MS-compatible name lister (nm) configure:5323: result: /usr/bin/nm -B configure:5453: checking the name lister (/usr/bin/nm -B) interface configure:5460: gcc -c -g -O2 conftest.c >&5 configure:5463: /usr/bin/nm -B "conftest.o" configure:5466: output 00000000 b .bss 00000000 d .data 00000000 N .debug_abbrev 00000000 N .debug_aranges 00000000 N .debug_info 00000000 N .debug_line 00000000 r .rdata$zzz 00000000 t .text 00000000 B _some_variable configure:5473: result: BSD nm configure:5476: checking whether ln -s works configure:5480: result: yes configure:5488: checking the maximum length of command line arguments configure:5619: result: 8192 configure:5667: checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format configure:5707: result: func_convert_file_noop configure:5714: checking how to convert i686-pc-cygwin file names to toolchain format configure:5734: result: func_convert_file_noop configure:5741: checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files configure:5748: result: -r configure:5822: checking for objdump configure:5838: found /usr/bin/objdump configure:5849: result: objdump configure:5881: checking how to recognize dependent libraries configure:6081: result: file_magic ^x86 archive import|^x86 DLL configure:6166: checking for dlltool configure:6182: found /usr/bin/dlltool configure:6193: result: dlltool configure:6226: checking how to associate runtime and link libraries configure:6253: result: func_cygming_dll_for_implib configure:6377: checking for archiver @FILE support configure:6394: gcc -c -g -O2 conftest.c >&5 configure:6394: $? = 0 configure:6397: ar cru libconftest.a @conftest.lst >&5 configure:6400: $? = 0 configure:6405: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6408: $? = 1 configure:6420: result: @ configure:6478: checking for strip configure:6494: found /usr/bin/strip configure:6505: result: strip configure:6577: checking for ranlib configure:6593: found /usr/bin/ranlib configure:6604: result: ranlib configure:6706: checking command to parse /usr/bin/nm -B output from gcc object configure:6859: gcc -c -g -O2 conftest.c >&5 configure:6862: $? = 0 configure:6866: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6869: $? = 0 cannot find nm_test_var in conftest.nm configure:6859: gcc -c -g -O2 conftest.c >&5 configure:6862: $? = 0 configure:6866: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6869: $? = 0 configure:6935: gcc -o conftest.exe -g -O2 conftest.c conftstm.o >&5 configure:6938: $? = 0 configure:6976: result: ok configure:7023: checking for sysroot configure:7053: result: no configure:7060: checking for a working dd configure:7098: result: /usr/bin/dd configure:7102: checking how to truncate binary pipes configure:7117: result: /usr/bin/dd bs=4096 count=1 configure:7446: checking for mt configure:7476: result: no configure:7496: checking if : is a manifest tool configure:7502: : '-?' configure:7510: result: no configure:8187: checking how to run the C preprocessor configure:8218: gcc -E conftest.c configure:8218: $? = 0 configure:8232: gcc -E conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:8232: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | /* end confdefs.h. */ | #include configure:8257: result: gcc -E configure:8277: gcc -E conftest.c configure:8277: $? = 0 configure:8291: gcc -E conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:8291: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | /* end confdefs.h. */ | #include configure:8320: checking for ANSI C header files configure:8340: gcc -c -g -O2 conftest.c >&5 configure:8340: $? = 0 configure:8413: gcc -o conftest.exe -g -O2 conftest.c >&5 configure:8413: $? = 0 configure:8413: ./conftest.exe configure:8413: $? = 0 configure:8424: result: yes configure:8437: checking for sys/types.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for sys/stat.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for stdlib.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for string.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for memory.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for strings.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for inttypes.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for stdint.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for unistd.h configure:8437: gcc -c -g -O2 conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8451: checking for dlfcn.h configure:8451: gcc -c -g -O2 conftest.c >&5 configure:8451: $? = 0 configure:8451: result: yes configure:8707: checking for objdir configure:8722: result: .libs configure:8986: checking if gcc supports -fno-rtti -fno-exceptions configure:9004: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:9008: $? = 0 configure:9021: result: no configure:9379: checking for gcc option to produce PIC configure:9386: result: -DDLL_EXPORT -DPIC configure:9394: checking if gcc PIC flag -DDLL_EXPORT -DPIC works configure:9412: gcc -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.c >&5 configure:9416: $? = 0 configure:9429: result: yes configure:9458: checking if gcc static flag -static works configure:9486: result: yes configure:9501: checking if gcc supports -c -o file.o configure:9522: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:9526: $? = 0 configure:9548: result: yes configure:9556: checking if gcc supports -c -o file.o configure:9603: result: yes configure:9636: checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:10895: result: yes configure:11135: checking dynamic linker characteristics configure:11953: result: Win32 ld.exe configure:12075: checking how to hardcode library paths into programs configure:12100: result: immediate configure:12648: checking whether stripping libraries is possible configure:12653: result: yes configure:12688: checking if libtool supports shared libraries configure:12690: result: yes configure:12693: checking whether to build shared libraries configure:12718: result: no configure:12721: checking whether to build static libraries configure:12725: result: yes configure:12810: checking for bash configure:12840: result: /bin/sh configure:12907: checking for gcc configure:12934: result: gcc configure:12999: checking for g++ configure:13015: found /usr/bin/g++ configure:13026: result: g++ configure:13048: checking for gcc option to accept ISO C99 configure:13197: gcc -c -g -O2 conftest.c >&5 conftest.c:74:29: error: expected ';', ',' or ')' before 'text' test_restrict (ccp restrict text) ^ conftest.c: In function 'main': conftest.c:128:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' char *restrict newvar = "Another string"; ^ conftest.c:128:18: error: 'newvar' undeclared (first use in this function) conftest.c:128:18: note: each undeclared identifier is reported only once for each function it appears in conftest.c:138:3: error: 'for' loop initial declarations are only allowed in C99 or C11 mode for (int i = 0; i < ia->datasize; ++i) ^ conftest.c:138:3: note: use option -std=c99, -std=gnu99, -std=c11 or -std=gnu11 to compile your code configure:13197: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:13197: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:13197: $? = 0 configure:13217: result: -std=gnu99 configure:13338: checking for C++ compiler version configure:13347: g++ --version >&5 g++ (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13358: $? = 0 configure:13347: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.9.2/lto-wrapper.exe Target: i686-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.9.2 (GCC) configure:13358: $? = 0 configure:13347: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:13358: $? = 1 configure:13347: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion' g++: fatal error: no input files compilation terminated. configure:13358: $? = 1 configure:13362: checking whether we are using the GNU C++ compiler configure:13381: g++ -c conftest.cpp >&5 configure:13381: $? = 0 configure:13390: result: yes configure:13399: checking whether g++ accepts -g configure:13419: g++ -c -g conftest.cpp >&5 configure:13419: $? = 0 configure:13460: result: yes configure:13485: checking dependency style of g++ configure:13596: result: gcc3 configure:13629: checking how to run the C++ preprocessor configure:13656: g++ -E conftest.cpp configure:13656: $? = 0 configure:13670: g++ -E conftest.cpp conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:13670: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13695: result: g++ -E configure:13715: g++ -E conftest.cpp configure:13715: $? = 0 configure:13729: g++ -E conftest.cpp conftest.cpp:24:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:13729: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13891: checking for ld used by g++ configure:13958: result: /usr/i686-pc-cygwin/bin/ld.exe configure:13965: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld configure:13980: result: yes configure:14035: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:15108: result: yes configure:15144: g++ -c -g -O2 conftest.cpp >&5 configure:15147: $? = 0 configure:15628: checking for g++ option to produce PIC configure:15635: result: -DDLL_EXPORT -DPIC configure:15643: checking if g++ PIC flag -DDLL_EXPORT -DPIC works configure:15661: g++ -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.cpp >&5 configure:15665: $? = 0 configure:15678: result: yes configure:15701: checking if g++ static flag -static works configure:15729: result: yes configure:15741: checking if g++ supports -c -o file.o configure:15762: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:15766: $? = 0 configure:15788: result: yes configure:15793: checking if g++ supports -c -o file.o configure:15840: result: yes configure:15870: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:15910: result: yes configure:16051: checking dynamic linker characteristics configure:16796: result: Win32 ld.exe configure:16861: checking how to hardcode library paths into programs configure:16886: result: immediate configure:16979: checking for g77 configure:17009: result: no configure:16979: checking for xlf configure:17009: result: no configure:16979: checking for f77 configure:17009: result: no configure:16979: checking for frt configure:17009: result: no configure:16979: checking for pgf77 configure:17009: result: no configure:16979: checking for cf77 configure:17009: result: no configure:16979: checking for fort77 configure:17009: result: no configure:16979: checking for fl32 configure:17009: result: no configure:16979: checking for af77 configure:17009: result: no configure:16979: checking for xlf90 configure:17009: result: no configure:16979: checking for f90 configure:17009: result: no configure:16979: checking for pgf90 configure:17009: result: no configure:16979: checking for pghpf configure:17009: result: no configure:16979: checking for epcf90 configure:17009: result: no configure:16979: checking for gfortran configure:16995: found /usr/bin/gfortran configure:17006: result: gfortran configure:17032: checking for Fortran 77 compiler version configure:17041: gfortran --version >&5 GNU Fortran (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING configure:17052: $? = 0 configure:17041: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.9.2/lto-wrapper.exe Target: i686-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.9.2 (GCC) configure:17052: $? = 0 configure:17041: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:17052: $? = 1 configure:17041: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion' gfortran: fatal error: no input files compilation terminated. configure:17052: $? = 1 configure:17061: checking whether we are using the GNU Fortran 77 compiler configure:17074: gfortran -c conftest.F >&5 configure:17074: $? = 0 configure:17083: result: yes configure:17089: checking whether gfortran accepts -g configure:17100: gfortran -c -g conftest.f >&5 configure:17100: $? = 0 configure:17108: result: yes configure:17237: checking if libtool supports shared libraries configure:17239: result: yes configure:17242: checking whether to build shared libraries configure:17266: result: no configure:17269: checking whether to build static libraries configure:17273: result: yes configure:17625: checking for gfortran option to produce PIC configure:17632: result: -DDLL_EXPORT configure:17640: checking if gfortran PIC flag -DDLL_EXPORT works configure:17658: gfortran -c -g -O2 -DDLL_EXPORT conftest.f >&5 configure:17662: $? = 0 configure:17675: result: yes configure:17698: checking if gfortran static flag -static works configure:17726: result: yes configure:17738: checking if gfortran supports -c -o file.o configure:17759: gfortran -c -g -O2 -o out/conftest2.o conftest.f >&5 configure:17763: $? = 0 configure:17785: result: yes configure:17790: checking if gfortran supports -c -o file.o configure:17837: result: yes configure:17867: checking whether the gfortran linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:19076: result: yes configure:19217: checking dynamic linker characteristics configure:19956: result: Win32 ld.exe configure:20021: checking how to hardcode library paths into programs configure:20046: result: immediate configure:20079: checking for C/C++ restrict keyword configure:20104: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:20104: $? = 0 configure:20112: result: __restrict configure:20132: checking whether g++ supports C++11 features by default configure:20426: g++ -c -g -O2 conftest.cpp >&5 conftest.cpp:36:2: error: #error "This is not a C++11 compiler" #error "This is not a C++11 compiler" ^ configure:20426: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | | // If the compiler admits that it is not ready for C++11, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201103L | | #error "This is not a C++11 compiler" | | #else | | namespace cxx11 | { | | namespace test_static_assert | { | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | } | | namespace test_final_override | { | | struct Base | { | virtual void f() {} | }; | | struct Derived : public Base | { | virtual void f() override {} | }; | | } | | namespace test_double_right_angle_brackets | { | | template < typename T > | struct check {}; | | typedef check single_type; | typedef check> double_type; | typedef check>> triple_type; | typedef check>>> quadruple_type; | | } | | namespace test_decltype | { | | int | f() | { | int a = 1; | decltype(a) b = 2; | return a + b; | } | | } | | namespace test_type_deduction | { | | template < typename T1, typename T2 > | struct is_same | { | static const bool value = false; | }; | | template < typename T > | struct is_same | { | static const bool value = true; | }; | | template < typename T1, typename T2 > | auto | add(T1 a1, T2 a2) -> decltype(a1 + a2) | { | return a1 + a2; | } | | int | test(const int c, volatile int v) | { | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == false, ""); | auto ac = c; | auto av = v; | auto sumi = ac + av + 'x'; | auto sumf = ac + av + 1.0; | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == true, ""); | return (sumf > 0.0) ? sumi : add(c, v); | } | | } | | namespace test_noexcept | { | | int f() { return 0; } | int g() noexcept { return 0; } | | static_assert(noexcept(f()) == false, ""); | static_assert(noexcept(g()) == true, ""); | | } | | namespace test_constexpr | { | | template < typename CharT > | unsigned long constexpr | strlen_c_r(const CharT *const s, const unsigned long acc) noexcept | { | return *s ? strlen_c_r(s + 1, acc + 1) : acc; | } | | template < typename CharT > | unsigned long constexpr | strlen_c(const CharT *const s) noexcept | { | return strlen_c_r(s, 0UL); | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("1") == 1UL, ""); | static_assert(strlen_c("example") == 7UL, ""); | static_assert(strlen_c("another\0example") == 7UL, ""); | | } | | namespace test_rvalue_references | { | | template < int N > | struct answer | { | static constexpr int value = N; | }; | | answer<1> f(int&) { return answer<1>(); } | answer<2> f(const int&) { return answer<2>(); } | answer<3> f(int&&) { return answer<3>(); } | | void | test() | { | int i = 0; | const int c = 0; | static_assert(decltype(f(i))::value == 1, ""); | static_assert(decltype(f(c))::value == 2, ""); | static_assert(decltype(f(0))::value == 3, ""); | } | | } | | namespace test_uniform_initialization | { | | struct test | { | static const int zero {}; | static const int one {1}; | }; | | static_assert(test::zero == 0, ""); | static_assert(test::one == 1, ""); | | } | | namespace test_lambdas | { | | void | test1() | { | auto lambda1 = [](){}; | auto lambda2 = lambda1; | lambda1(); | lambda2(); | } | | int | test2() | { | auto a = [](int i, int j){ return i + j; }(1, 2); | auto b = []() -> int { return '0'; }(); | auto c = [=](){ return a + b; }(); | auto d = [&](){ return c; }(); | auto e = [a, &b](int x) mutable { | const auto identity = [](int y){ return y; }; | for (auto i = 0; i < a; ++i) | a += b--; | return x + identity(a + b); | }(0); | return a + b + c + d + e; | } | | int | test3() | { | const auto nullary = [](){ return 0; }; | const auto unary = [](int x){ return x; }; | using nullary_t = decltype(nullary); | using unary_t = decltype(unary); | const auto higher1st = [](nullary_t f){ return f(); }; | const auto higher2nd = [unary](nullary_t f1){ | return [unary, f1](unary_t f2){ return f2(unary(f1())); }; | }; | return higher1st(nullary) + higher2nd(nullary)(unary); | } | | } | | namespace test_variadic_templates | { | | template | struct sum; | | template | struct sum | { | static constexpr auto value = N0 + sum::value; | }; | | template <> | struct sum<> | { | static constexpr auto value = 0; | }; | | static_assert(sum<>::value == 0, ""); | static_assert(sum<1>::value == 1, ""); | static_assert(sum<23>::value == 23, ""); | static_assert(sum<1, 2>::value == 3, ""); | static_assert(sum<5, 5, 11>::value == 21, ""); | static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, ""); | | } | | // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae | // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function | // because of this. | namespace test_template_alias_sfinae | { | | struct foo {}; | | template | using member = typename T::member_type; | | template | void func(...) {} | | template | void func(member*) {} | | void test(); | | void test() { func(0); } | | } | | } // namespace cxx11 | | #endif // __cplusplus >= 201103L | | | configure:20433: result: no configure:20443: checking whether g++ supports C++11 features with -std=gnu++11 configure:20739: g++ -std=gnu++11 -c -g -O2 conftest.cpp >&5 configure:20739: $? = 0 configure:20748: result: yes configure:21118: checking for gcc -std=gnu99 option to support OpenMP configure:21133: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' choke me ^ In file included from conftest.c:30:0: /usr/lib/gcc/i686-pc-cygwin/4.9.2/include/omp.h:34:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef' typedef struct ^ configure:21133: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c >&5 configure:21151: $? = 0 configure:21165: result: -fopenmp configure:21219: checking for ar configure:21246: result: ar configure:21403: checking for ld configure:21430: result: /usr/i686-pc-cygwin/bin/ld.exe configure:21495: checking for nm configure:21522: result: /usr/bin/nm -B configure:21587: checking for ar configure:21614: result: ar configure:21679: checking for as configure:21695: found /usr/bin/as configure:21706: result: as configure:21771: checking for dlltool configure:21798: result: dlltool configure:21863: checking for objdump configure:21890: result: objdump configure:21955: checking for strip configure:21982: result: strip configure:22047: checking for ranlib configure:22074: result: ranlib configure:22110: checking for special C compiler options needed for large files configure:22155: result: no configure:22161: checking for _FILE_OFFSET_BITS value needed for large files configure:22186: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22186: $? = 0 configure:22218: result: no configure:22311: checking for stdlib.h configure:22311: result: yes configure:22311: checking for unistd.h configure:22311: result: yes configure:22311: checking for sys/param.h configure:22311: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22311: $? = 0 configure:22311: result: yes configure:22331: checking for getpagesize configure:22331: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:22331: $? = 0 configure:22331: result: yes configure:22340: checking for working mmap configure:22487: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:22487: $? = 0 configure:22487: ./conftest.exe configure:22487: $? = 0 configure:22497: result: yes configure:22508: checking for malloc in -lmalloc configure:22533: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lmalloc >&5 conftest.c:38:6: warning: conflicting types for built-in function 'malloc' char malloc (); ^ /usr/lib/gcc/i686-pc-cygwin/4.9.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lmalloc collect2: error: ld returned 1 exit status configure:22533: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:22542: result: no configure:22555: checking for struct stat.st_blksize configure:22555: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22555: $? = 0 configure:22555: result: yes configure:22569: checking sys/resource.h usability configure:22569: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22569: $? = 0 configure:22569: result: yes configure:22569: checking sys/resource.h presence configure:22569: gcc -E conftest.c configure:22569: $? = 0 configure:22569: result: yes configure:22569: checking for sys/resource.h configure:22569: result: yes configure:22581: checking sys/times.h usability configure:22581: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22581: $? = 0 configure:22581: result: yes configure:22581: checking sys/times.h presence configure:22581: gcc -E conftest.c configure:22581: $? = 0 configure:22581: result: yes configure:22581: checking for sys/times.h configure:22581: result: yes configure:22593: checking malloc.h usability configure:22593: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22593: $? = 0 configure:22593: result: yes configure:22593: checking malloc.h presence configure:22593: gcc -E conftest.c configure:22593: $? = 0 configure:22593: result: yes configure:22593: checking for malloc.h configure:22593: result: yes configure:22605: checking glob.h usability configure:22605: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22605: $? = 0 configure:22605: result: yes configure:22605: checking glob.h presence configure:22605: gcc -E conftest.c configure:22605: $? = 0 configure:22605: result: yes configure:22605: checking for glob.h configure:22605: result: yes configure:22617: checking fnmatch.h usability configure:22617: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22617: $? = 0 configure:22617: result: yes configure:22617: checking fnmatch.h presence configure:22617: gcc -E conftest.c configure:22617: $? = 0 configure:22617: result: yes configure:22617: checking for fnmatch.h configure:22617: result: yes configure:22629: checking wordexp.h usability configure:22629: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22629: $? = 0 configure:22629: result: yes configure:22629: checking wordexp.h presence configure:22629: gcc -E conftest.c configure:22629: $? = 0 configure:22629: result: yes configure:22629: checking for wordexp.h configure:22629: result: yes configure:22641: checking execinfo.h usability configure:22641: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c:71:22: fatal error: execinfo.h: No such file or directory #include ^ compilation terminated. configure:22641: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:22641: result: no configure:22641: checking execinfo.h presence configure:22641: gcc -E conftest.c conftest.c:38:22: fatal error: execinfo.h: No such file or directory #include ^ compilation terminated. configure:22641: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | /* end confdefs.h. */ | #include configure:22641: result: no configure:22641: checking for execinfo.h configure:22641: result: no configure:22655: checking for mallinfo configure:22655: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:22655: $? = 0 configure:22655: result: yes configure:22666: checking for backtrace configure:22666: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 /tmp/ccpMAkVv.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:73: undefined reference to `backtrace' collect2: error: ld returned 1 exit status configure:22666: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | /* end confdefs.h. */ | /* Define backtrace to an innocuous variant, in case declares backtrace. | For example, HP-UX 11i declares gettimeofday. */ | #define backtrace innocuous_backtrace | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char backtrace (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef backtrace | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char backtrace (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_backtrace || defined __stub___backtrace | choke me | #endif | | int | main () | { | return backtrace (); | ; | return 0; | } configure:22666: result: no configure:22679: checking for getrlimit configure:22679: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:22679: $? = 0 configure:22679: result: yes configure:22690: checking for gethostname configure:22690: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:22690: $? = 0 configure:22690: result: yes configure:22765: checking for floor in -lm configure:22790: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 conftest.c:52:6: warning: conflicting types for built-in function 'floor' char floor (); ^ configure:22790: $? = 0 configure:22799: result: yes configure:22812: checking whether isnan is declared configure:22812: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:22812: $? = 0 configure:22812: result: yes configure:22827: checking for sqrtl configure:22827: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 conftest.c:70:6: warning: conflicting types for built-in function 'sqrtl' char sqrtl (); ^ configure:22827: $? = 0 configure:22827: result: yes configure:22838: checking for feenableexcept configure:22838: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 configure:22838: $? = 0 configure:22838: result: yes configure:22848: checking for fenv_t.__control configure:22848: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:55:12: error: 'fenv_t' has no member named '__control' if (ac_aggr.__control) ^ configure:22848: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:22848: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:55:19: error: 'fenv_t' has no member named '__control' if (sizeof ac_aggr.__control) ^ configure:22848: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:22848: result: no configure:22858: checking for fenv_t.__mxcsr configure:22858: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:55:12: error: 'fenv_t' has no member named '__mxcsr' if (ac_aggr.__mxcsr) ^ configure:22858: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__mxcsr) | return 0; | ; | return 0; | } configure:22858: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:55:19: error: 'fenv_t' has no member named '__mxcsr' if (sizeof ac_aggr.__mxcsr) ^ configure:22858: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__mxcsr) | return 0; | ; | return 0; | } configure:22858: result: no configure:22881: checking C preprocessor flags for Fortran calling convention cfortran.h configure:22967: result: (probed) configure:23002: checking if C externals constructed with cfortran.h work configure:23062: gcc -std=gnu99 -c -g -O2 -I./src conftest.c >&5 In file included from conftest.c:49:0: ./src/cfortran.h:209:2: warning: #warning "Please specify the fortran compiler using -D flags. Try to guess the compiler used" [-Wcpp] #warning "Please specify the fortran compiler using -D flags. Try to guess the compiler used" ^ configure:23062: $? = 0 configure:23063: Renaming C object file. configure:23066: $? = 0 configure:23084: gfortran -c -g -O2 conftest.f >&5 configure:23084: $? = 0 configure:23085: Renaming Fortran object file. configure:23088: $? = 0 configure:23144: gfortran -o conftest.exe -g -O2 conftest.f conftest_c.o conftest_f.o -lm >&5 configure:23144: $? = 0 configure:23144: ./conftest.exe configure:23144: $? = 0 configure:23178: result: yes configure:23232: checking for DATA support configure:23246: result: configure:23398: checking if compiler needs -Werror to reject unknown flags configure:23414: gcc -std=gnu99 -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5 gcc: error: unrecognized command line option '-Wunknown-warning-option' gcc: error: unrecognized command line option '-Wsizeof-array-argument' configure:23414: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:23419: result: no configure:23485: checking for the pthreads library -lpthreads configure:23523: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lpthreads -lm >&5 /usr/lib/gcc/i686-pc-cygwin/4.9.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:23523: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:23532: result: no configure:23430: checking whether pthreads work without any flags configure:23523: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lm >&5 configure:23523: $? = 0 configure:23532: result: yes configure:23551: checking for joinable pthread attribute configure:23566: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lm >&5 configure:23566: $? = 0 configure:23572: result: PTHREAD_CREATE_JOINABLE configure:23582: checking if more special flags are required for pthreads configure:23597: result: no configure:23603: checking for PTHREAD_PRIO_INHERIT configure:23620: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lm >&5 conftest.c: In function 'main': conftest.c:55:9: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function) int i = PTHREAD_PRIO_INHERIT; ^ conftest.c:55:9: note: each undeclared identifier is reported only once for each function it appears in configure:23620: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | int | main () | { | int i = PTHREAD_PRIO_INHERIT; | ; | return 0; | } configure:23629: result: no configure:23898: checking szlib.h usability configure:23898: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:23898: $? = 0 configure:23898: result: yes configure:23898: checking szlib.h presence configure:23898: gcc -E -I/usr/local/include conftest.c configure:23898: $? = 0 configure:23898: result: yes configure:23898: checking for szlib.h configure:23898: result: yes configure:23908: checking for library containing SZ_BufftoBuffCompress configure:23939: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lm >&5 /tmp/cc3u2WLD.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:64: undefined reference to `SZ_BufftoBuffCompress' collect2: error: ld returned 1 exit status configure:23939: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:23939: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lsz -lm >&5 configure:23939: $? = 0 configure:23956: result: -lsz configure:24003: checking hdf5.h usability configure:24003: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:24003: $? = 0 configure:24003: result: yes configure:24003: checking hdf5.h presence configure:24003: gcc -E -I/usr/local/include conftest.c configure:24003: $? = 0 configure:24003: result: yes configure:24003: checking for hdf5.h configure:24003: result: yes configure:24013: checking for library containing H5Fopen configure:24044: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lsz -lm >&5 /tmp/ccLEB9rc.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:66: undefined reference to `H5Fopen' collect2: error: ld returned 1 exit status configure:24044: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:24044: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5 -lsz -lm >&5 configure:24044: $? = 0 configure:24061: result: -lhdf5 configure:24073: checking for library containing H5DSis_scale configure:24104: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5 -lsz -lm >&5 /tmp/cc7D5EXw.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:67: undefined reference to `H5DSis_scale' collect2: error: ld returned 1 exit status configure:24104: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:24104: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lm >&5 configure:24104: $? = 0 configure:24121: result: -lhdf5_hl configure:24320: checking netcdf.h usability configure:24320: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:24320: $? = 0 configure:24320: result: yes configure:24320: checking netcdf.h presence configure:24320: gcc -E -I/usr/local/include conftest.c configure:24320: $? = 0 configure:24320: result: yes configure:24320: checking for netcdf.h configure:24320: result: yes configure:24330: checking for library containing nc_open configure:24361: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccR3yz4X.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:68: undefined reference to `nc_open' collect2: error: ld returned 1 exit status configure:24361: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:24361: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 configure:24361: $? = 0 configure:24378: result: -lnetcdf configure:24394: checking for nc-config configure:24410: found /usr/bin/nc-config configure:24421: result: nc-config configure:24430: checking netcdf's OpenDAP support configure:24436: result: yes configure:24442: checking netcdf's nc2 support configure:24449: result: yes configure:24455: checking netcdf's nc4 support configure:24462: result: yes configure:24468: checking netcdf's nc4/hdf5 support configure:24475: result: yes configure:24675: checking for library containing H5TS_mutex_lock configure:24706: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccYeOa1x.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:73: undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:24706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:24706: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccJ7E0eh.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:73: undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:24706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:24723: result: no configure:24930: checking for the UDUNITS2 library configure:24932: result: suppressed configure:25078: checking for uuid/uuid.h extra include path configure:25098: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:25098: $? = 0 configure:25125: result: (none required) configure:25153: checking for library containing uuid_generate configure:25186: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccxytRVz.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:73: undefined reference to `uuid_generate' collect2: error: ld returned 1 exit status configure:25186: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:25186: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -luuid -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 configure:25186: $? = 0 configure:25214: result: -luuid configure:25250: checking uuid/uuid.h usability configure:25250: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:25250: $? = 0 configure:25250: result: yes configure:25250: checking uuid/uuid.h presence configure:25250: gcc -E -I/usr/local/include conftest.c configure:25250: $? = 0 configure:25250: result: yes configure:25250: checking for uuid/uuid.h configure:25250: result: yes configure:25255: checking whether uuid_generate is declared configure:25255: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:25255: $? = 0 configure:25255: result: yes configure:25978: checking for the CMOR library configure:25980: result: suppressed configure:26160: checking for the ECCODES library configure:26162: result: suppressed configure:26264: checking grib_api.h usability configure:26264: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/grib_api/include -I/usr/local/include conftest.c >&5 configure:26264: $? = 0 configure:26264: result: yes configure:26264: checking grib_api.h presence configure:26264: gcc -E -I/usr/local/grib_api/include -I/usr/local/include conftest.c configure:26264: $? = 0 configure:26264: result: yes configure:26264: checking for grib_api.h configure:26264: result: yes configure:26274: checking for library containing grib_get_message configure:26305: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/grib_api/include -I/usr/local/include -L/usr/local/grib_api/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccA9Rwfw.o: In function `main': /usr/src/cdo-1.9.5/conftest.c:76: undefined reference to `grib_get_message' collect2: error: ld returned 1 exit status configure:26305: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_DECL_UUID_GENERATE 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:26305: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/grib_api/include -I/usr/local/include -L/usr/local/grib_api/lib -L/usr/local/lib conftest.c -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /usr/local/grib_api/lib/libgrib_api.a(grib_jasper_encoding.o): In function `grib_jasper_decode': /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:35: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:41: undefined reference to `jpc_decode' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:55: undefined reference to `jas_matrix_create' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:62: undefined reference to `jas_image_readcmpt' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:73: undefined reference to `jas_matrix_destroy' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:74: undefined reference to `jas_image_destroy' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:75: undefined reference to `jas_stream_close' /usr/local/grib_api/lib/libgrib_api.a(grib_jasper_encoding.o): In function `grib_jasper_encode': /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:171: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:174: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:175: undefined reference to `jpc_encode' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:197: undefined reference to `jas_stream_close' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:198: undefined reference to `jas_stream_close' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:181: undefined reference to `jas_stream_close' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:182: undefined reference to `jas_stream_close' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:184: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:186: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:187: undefined reference to `jpc_encode' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:202: undefined reference to `jas_stream_close' /usr/src/grib_api-1.28.0-Source/src/grib_jasper_encoding.c:203: undefined reference to `jas_stream_close' collect2: error: ld returned 1 exit status configure:26305: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5" | #define PACKAGE_STRING "cdo 1.9.5" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5" | #define PACKAGE "cdo" | #define VERSION "1.9.5" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "g++ (GCC) 4.9.2" | #define C_VERSION "gcc (GCC) 4.9.2" | #define F77_VERSION "GNU Fortran (GCC) 4.9.2" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define HAVE_CF_INTERFACE 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_DECL_UUID_GENERATE 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:26322: result: no configure:26332: error: Could not link to grib_api library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i686-pc-cygwin ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext=.exe ac_cv_f77_compiler_gnu=yes ac_cv_func_backtrace=no ac_cv_func_feenableexcept=yes ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_have_decl_uuid_generate=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=no ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_unistd_h=yes ac_cv_header_uuid_uuid_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=i686-pc-cygwin ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/usr/bin/dd ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=dlltool ac_cv_prog_ac_ct_F77=gfortran ac_cv_prog_ac_ct_LD=/usr/i686-pc-cygwin/bin/ld.exe ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_grib_get_message=no ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_c_include_uuid_uuid_h= acx_cv_cf_flag=' (probed)' acx_cv_cfortran_works=yes acx_cv_option_search_uuid_generate_c=' -luuid ' am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=no ax_cv_cxx_compile_cxx11=no ax_cv_cxx_compile_cxx11__std_gnupp11=yes lt_cv_ar_at_file=@ lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd=func_win32_libid lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/i686-pc-cygwin/bin/ld.exe lt_cv_path_LDCXX=/usr/i686-pc-cygwin/bin/ld.exe lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_c_o_F77=yes lt_cv_prog_compiler_pic='-DDLL_EXPORT -DPIC' lt_cv_prog_compiler_pic_CXX='-DDLL_EXPORT -DPIC' lt_cv_prog_compiler_pic_F77=-DDLL_EXPORT lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_pic_works_F77=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_compiler_static_works_F77=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=8192 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/usr/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /usr/src/cdo-1.9.5/config/missing aclocal-1.16' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /usr/src/cdo-1.9.5/config/missing autoconf' AUTOHEADER='${SHELL} /usr/src/cdo-1.9.5/config/missing autoheader' AUTOMAKE='${SHELL} /usr/src/cdo-1.9.5/config/missing automake-1.16' AWK='gawk' BASH='/bin/sh' BUILD_AVX2_TESTS_FALSE='' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='' BUILD_SSE42_TESTS_TRUE='' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -fopenmp ' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/local/grib_api/include -I/usr/local/include ' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++ -std=gnu++11' CXXCPP='g++ -E -std=gnu++11' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -fopenmp ' CYGPATH_W='cygpath -w' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='' DEPDIR='.deps' DLLTOOL='dlltool' DSYMUTIL='' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_DATA='true' ENABLE_EXTRA='' ENABLE_FORTRAN='true' ENABLE_GRIB='' ENABLE_GRIBAPI='no' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='' ENABLE_IEG='' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NETCDF='yes' ENABLE_SERVICE='' ENABLE_THREADS='yes' EXEEXT='.exe' F77='gfortran' FFLAGS='-g -O2' FGREP='/usr/bin/grep -F' FORTRAN_WORKS='yes' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HAVE_CXX11='1' HAVE_LIBGRIB_API_FALSE='' HAVE_LIBGRIB_API_TRUE='' HDF5_INCLUDE='' HDF5_LIBS=' -lhdf5' HDF5_ROOT='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/i686-pc-cygwin/bin/ld.exe' LDFLAGS='-L/usr/local/grib_api/lib -L/usr/local/lib ' LIBOBJS='' LIBS='-lnetcdf -lhdf5_hl -lhdf5 -lsz -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /usr/src/cdo-1.9.5/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NC_CONFIG='nc-config' NETCDF_INCLUDE='' NETCDF_LIBS=' -lnetcdf' NETCDF_ROOT='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.9.5' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.9.5' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='i686-pc-cygwin' SZLIB_INCLUDE=' -I/usr/local/include' SZLIB_LIBS=' -L/usr/local/lib -lsz' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USE_F77_FALSE='#' USE_F77_TRUE='' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='-luuid' UUID_C_INCLUDE='' UUID_C_LIB='-luuid' VERSION='1.9.5' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='gfortran' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='i686-pc-cygwin' build_alias='' build_cpu='i686' build_os='cygwin' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='i686-pc-cygwin' host_alias='' host_cpu='i686' host_os='cygwin' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /usr/src/cdo-1.9.5/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.9.5" #define PACKAGE_STRING "cdo 1.9.5" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.9.5" #define PACKAGE "cdo" #define VERSION "1.9.5" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_CXX11 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_MALLINFO 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define CXX_VERSION "g++ (GCC) 4.9.2" #define C_VERSION "gcc (GCC) 4.9.2" #define F77_VERSION "GNU Fortran (GCC) 4.9.2" #define SYSTEM_TYPE "i686-pc-cygwin" #define HAVE_LIBM 1 #define HAVE_DECL_ISNAN 1 #define HAVE_SQRTL 1 #define HAVE_FEENABLEEXCEPT 1 #define HAVE_CF_INTERFACE 1 #define ENABLE_DATA 1 #define HAVE_LIBPTHREAD 1 #define HAVE_SZLIB_H 1 #define HAVE_LIBSZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 #define HAVE_UUID_UUID_H 1 #define HAVE_DECL_UUID_GENERATE 1 #define HAVE_GRIB_API_H 1 configure: exit 1