This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.6.8, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure ## --------- ## ## Platform. ## ## --------- ## hostname = W541 uname -m = x86_64 uname -r = 4.4.0-17763-Microsoft uname -s = Linux uname -v = #1-Microsoft Fri Sep 14 14:34:00 PST 2018 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/miles/bin PATH: /home/miles/.local/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games PATH: /usr/local/games PATH: /mnt/c/Program Files (x86)/Business Objects/Common/3.5/bin/NOTES PATH: /mnt/c/Program Files (x86)/Business Objects/Common/3.5/bin/NOTES/DATA/ PATH: /mnt/c/Program Files/Microsoft MPI/Bin PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64_win/mpirt PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32_win/mpirt PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/intel64_win/compiler PATH: /mnt/c/Program Files (x86)/Common Files/Intel/Shared Libraries/redist/ia32_win/compiler PATH: /mnt/c/ProgramData/Oracle/Java/javapath PATH: /mnt/c/Windows/System32 PATH: /mnt/c/Windows PATH: /mnt/c/Windows/System32/wbem PATH: /mnt/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /mnt/c/Program Files (x86)/firebird/firebird_2_1/bin PATH: /mnt/c/Program Files/Microsoft SQL Server/120/Tools/Binn PATH: /mnt/c/Program Files/Microsoft SQL Server/130/Tools/Binn PATH: /mnt/c/Program Files/IBM/SPSS/Statistics/24/JRE/bin PATH: /mnt/c/Windows/System32/OpenSSH PATH: /mnt/c/Program Files/Intel/WiFi/bin PATH: /mnt/c/Program Files/Common Files/Intel/WirelessCommon PATH: /mnt/c/LF9573/Bin PATH: /mnt/c/Users/miles/AppData/Local/Microsoft/WindowsApps PATH: /snap/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2608: checking build system type configure:2622: result: x86_64-unknown-linux-gnu configure:2642: checking host system type configure:2655: result: x86_64-unknown-linux-gnu configure:2694: checking for a BSD-compatible install configure:2762: result: /usr/bin/install -c configure:2773: checking whether build environment is sane configure:2828: result: yes configure:2979: checking for a thread-safe mkdir -p configure:3018: result: /bin/mkdir -p configure:3025: checking for gawk configure:3041: found /usr/bin/gawk configure:3052: result: gawk configure:3063: checking whether make sets $(MAKE) configure:3085: result: yes configure:3114: checking whether make supports nested variables configure:3131: result: yes configure:3259: checking whether to enable maintainer-specific portions of Makefiles configure:3268: result: no configure:3295: checking for style of include used by make configure:3323: result: GNU configure:3394: checking for gcc configure:3410: found /usr/bin/gcc configure:3421: result: gcc configure:3650: checking for C compiler version configure:3659: gcc --version >&5 gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3670: $? = 0 configure:3659: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.5' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.5) configure:3670: $? = 0 configure:3659: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3670: $? = 1 configure:3659: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3670: $? = 1 configure:3690: checking whether the C compiler works configure:3712: gcc conftest.c >&5 configure:3716: $? = 0 configure:3764: result: yes configure:3767: checking for C compiler default output file name configure:3769: result: a.out configure:3775: checking for suffix of executables configure:3782: gcc -o conftest conftest.c >&5 configure:3786: $? = 0 configure:3808: result: configure:3830: checking whether we are cross compiling configure:3838: gcc -o conftest conftest.c >&5 configure:3842: $? = 0 configure:3849: ./conftest configure:3853: $? = 0 configure:3868: result: no configure:3873: checking for suffix of object files configure:3895: gcc -c conftest.c >&5 configure:3899: $? = 0 configure:3920: result: o configure:3924: checking whether we are using the GNU C compiler configure:3943: gcc -c conftest.c >&5 configure:3943: $? = 0 configure:3952: result: yes configure:3961: checking whether gcc accepts -g configure:3981: gcc -c -g conftest.c >&5 configure:3981: $? = 0 configure:4022: result: yes configure:4039: checking for gcc option to accept ISO C89 configure:4103: gcc -c -g -O2 conftest.c >&5 configure:4103: $? = 0 configure:4116: result: none needed configure:4141: checking whether gcc understands -c and -o together configure:4163: gcc -c conftest.c -o conftest2.o configure:4166: $? = 0 configure:4163: gcc -c conftest.c -o conftest2.o configure:4166: $? = 0 configure:4178: result: yes configure:4197: checking dependency style of gcc configure:4308: result: gcc3 configure:4373: checking for ar configure:4389: found /usr/bin/ar configure:4400: result: ar configure:4426: checking the archiver (ar) interface configure:4442: gcc -c -g -O2 conftest.c >&5 configure:4442: $? = 0 configure:4444: ar cru libconftest.a conftest.o >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:4447: $? = 0 configure:4475: result: ar configure:4496: setting up libtool configure:4544: checking how to print strings configure:4571: result: printf configure:4592: checking for a sed that does not truncate output configure:4656: result: /bin/sed configure:4674: checking for grep that handles long lines and -e configure:4732: result: /bin/grep configure:4737: checking for egrep configure:4799: result: /bin/grep -E configure:4804: checking for fgrep configure:4866: result: /bin/grep -F configure:4901: checking for ld used by gcc configure:4968: result: /usr/bin/ld configure:4975: checking if the linker (/usr/bin/ld) is GNU ld configure:4990: result: yes configure:5002: checking for BSD- or MS-compatible name lister (nm) configure:5051: result: /usr/bin/nm -B configure:5181: checking the name lister (/usr/bin/nm -B) interface configure:5188: gcc -c -g -O2 conftest.c >&5 configure:5191: /usr/bin/nm -B "conftest.o" configure:5194: output 0000000000000000 B some_variable configure:5201: result: BSD nm configure:5204: checking whether ln -s works configure:5208: result: yes configure:5216: checking the maximum length of command line arguments configure:5346: result: 1572864 configure:5363: checking whether the shell understands some XSI constructs configure:5373: result: yes configure:5377: checking whether the shell understands "+=" configure:5383: result: yes configure:5418: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:5458: result: func_convert_file_noop configure:5465: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:5485: result: func_convert_file_noop configure:5492: checking for /usr/bin/ld option to reload object files configure:5499: result: -r configure:5573: checking for objdump configure:5589: found /usr/bin/objdump configure:5600: result: objdump configure:5632: checking how to recognize dependent libraries configure:5834: result: pass_all configure:5919: checking for dlltool configure:5949: result: no configure:5979: checking how to associate runtime and link libraries configure:6006: result: printf %s\n configure:6130: checking for archiver @FILE support configure:6147: gcc -c -g -O2 conftest.c >&5 configure:6147: $? = 0 configure:6150: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') configure:6153: $? = 0 configure:6158: ar cru libconftest.a @conftest.lst >&5 ar: `u' modifier ignored since `D' is the default (see `U') ar: conftest.o: No such file or directory configure:6161: $? = 1 configure:6173: result: @ configure:6231: checking for strip configure:6247: found /usr/bin/strip configure:6258: result: strip configure:6330: checking for ranlib configure:6346: found /usr/bin/ranlib configure:6357: result: ranlib configure:6459: checking command to parse /usr/bin/nm -B output from gcc object configure:6579: gcc -c -g -O2 conftest.c >&5 configure:6582: $? = 0 configure:6586: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6589: $? = 0 configure:6655: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:6658: $? = 0 configure:6696: result: ok configure:6733: checking for sysroot configure:6763: result: no configure:6840: gcc -c -g -O2 conftest.c >&5 configure:6843: $? = 0 configure:7019: checking for mt configure:7035: found /bin/mt configure:7046: result: mt configure:7069: checking if mt is a manifest tool configure:7075: mt '-?' configure:7083: result: no configure:7725: checking how to run the C preprocessor configure:7756: gcc -E conftest.c configure:7756: $? = 0 configure:7770: gcc -E conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:7770: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | /* end confdefs.h. */ | #include configure:7795: result: gcc -E configure:7815: gcc -E conftest.c configure:7815: $? = 0 configure:7829: gcc -E conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:7829: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | /* end confdefs.h. */ | #include configure:7858: checking for ANSI C header files configure:7878: gcc -c -g -O2 conftest.c >&5 configure:7878: $? = 0 configure:7951: gcc -o conftest -g -O2 conftest.c >&5 configure:7951: $? = 0 configure:7951: ./conftest configure:7951: $? = 0 configure:7962: result: yes configure:7975: checking for sys/types.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for sys/stat.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for stdlib.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for string.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for memory.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for strings.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for inttypes.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for stdint.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for unistd.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7989: checking for dlfcn.h configure:7989: gcc -c -g -O2 conftest.c >&5 configure:7989: $? = 0 configure:7989: result: yes configure:8195: checking for objdir configure:8210: result: .libs configure:8481: checking if gcc supports -fno-rtti -fno-exceptions configure:8499: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:8503: $? = 0 configure:8516: result: no configure:8843: checking for gcc option to produce PIC configure:8850: result: -fPIC -DPIC configure:8858: checking if gcc PIC flag -fPIC -DPIC works configure:8876: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:8880: $? = 0 configure:8893: result: yes configure:8922: checking if gcc static flag -static works configure:8950: result: yes configure:8965: checking if gcc supports -c -o file.o configure:8986: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:8990: $? = 0 configure:9012: result: yes configure:9020: checking if gcc supports -c -o file.o configure:9067: result: yes configure:9100: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:10253: result: yes configure:10290: checking whether -lc should be explicitly linked in configure:10298: gcc -c -g -O2 conftest.c >&5 configure:10301: $? = 0 configure:10316: gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:10319: $? = 0 configure:10333: result: no configure:10493: checking dynamic linker characteristics configure:11004: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:11004: $? = 0 configure:11226: result: GNU/Linux ld.so configure:11333: checking how to hardcode library paths into programs configure:11358: result: immediate configure:11898: checking whether stripping libraries is possible configure:11903: result: yes configure:11938: checking if libtool supports shared libraries configure:11940: result: yes configure:11943: checking whether to build shared libraries configure:11964: result: yes configure:11967: checking whether to build static libraries configure:11971: result: yes configure:12053: checking for gcc configure:12080: result: gcc configure:12102: checking for gcc option to accept ISO C99 configure:12251: gcc -c -g -O2 conftest.c >&5 configure:12251: $? = 0 configure:12264: result: none needed configure:12280: checking for C/C++ restrict keyword configure:12305: gcc -c -g -O2 conftest.c >&5 configure:12305: $? = 0 configure:12313: result: __restrict configure:12334: checking for gcc option to support OpenMP configure:12349: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:27:2: error: unknown type name 'choke' choke me ^ In file included from conftest.c:29:0: /usr/lib/gcc/x86_64-linux-gnu/5/include/omp.h:35:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef' typedef struct ^ configure:12349: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12366: gcc -o conftest -g -O2 -fopenmp conftest.c >&5 configure:12366: $? = 0 configure:12380: result: -fopenmp configure:12434: checking for ar configure:12461: result: ar configure:12618: checking for ld configure:12645: result: /usr/bin/ld -m elf_x86_64 configure:12710: checking for nm configure:12737: result: /usr/bin/nm -B configure:12802: checking for ar configure:12829: result: ar configure:12894: checking for as configure:12910: found /usr/bin/as configure:12921: result: as configure:12986: checking for dlltool configure:13013: result: false configure:13078: checking for objdump configure:13105: result: objdump configure:13170: checking for strip configure:13197: result: strip configure:13262: checking for ranlib configure:13289: result: ranlib configure:13370: checking for g++ configure:13400: result: no configure:13370: checking for c++ configure:13400: result: no configure:13370: checking for gpp configure:13400: result: no configure:13370: checking for aCC configure:13400: result: no configure:13370: checking for CC configure:13400: result: no configure:13370: checking for cxx configure:13400: result: no configure:13370: checking for cc++ configure:13400: result: no configure:13370: checking for cl.exe configure:13400: result: no configure:13370: checking for FCC configure:13400: result: no configure:13370: checking for KCC configure:13400: result: no configure:13370: checking for RCC configure:13400: result: no configure:13370: checking for xlC_r configure:13400: result: no configure:13370: checking for xlC configure:13400: result: no configure:13424: checking for C++ compiler version configure:13433: g++ --version >&5 ./configure: line 13435: g++: command not found configure:13444: $? = 127 configure:13433: g++ -v >&5 ./configure: line 13435: g++: command not found configure:13444: $? = 127 configure:13433: g++ -V >&5 ./configure: line 13435: g++: command not found configure:13444: $? = 127 configure:13433: g++ -qversion >&5 ./configure: line 13435: g++: command not found configure:13444: $? = 127 configure:13448: checking whether we are using the GNU C++ compiler configure:13467: g++ -c conftest.cpp >&5 ./configure: line 1911: g++: command not found configure:13467: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | int | main () | { | #ifndef __GNUC__ | choke me | #endif | | ; | return 0; | } configure:13476: result: no configure:13485: checking whether g++ accepts -g configure:13505: g++ -c -g conftest.cpp >&5 ./configure: line 1911: g++: command not found configure:13505: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:13520: g++ -c conftest.cpp >&5 ./configure: line 1911: g++: command not found configure:13520: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:13536: g++ -c -g conftest.cpp >&5 ./configure: line 1911: g++: command not found configure:13536: $? = 127 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:13546: result: no configure:13571: checking dependency style of g++ configure:13682: result: none configure:16908: checking for special C compiler options needed for large files configure:16953: result: no configure:16959: checking for _FILE_OFFSET_BITS value needed for large files configure:16984: gcc -c -g -O2 conftest.c >&5 configure:16984: $? = 0 configure:17016: result: no configure:17107: checking for stdlib.h configure:17107: result: yes configure:17107: checking for unistd.h configure:17107: result: yes configure:17107: checking for sys/param.h configure:17107: gcc -c -g -O2 conftest.c >&5 configure:17107: $? = 0 configure:17107: result: yes configure:17127: checking for getpagesize configure:17127: gcc -o conftest -g -O2 conftest.c >&5 configure:17127: $? = 0 configure:17127: result: yes configure:17136: checking for working mmap configure:17283: gcc -o conftest -g -O2 conftest.c >&5 configure:17283: $? = 0 configure:17283: ./conftest configure:17283: $? = 0 configure:17293: result: yes configure:17304: checking for malloc in -lmalloc configure:17329: gcc -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:37:6: warning: conflicting types for built-in function 'malloc' char malloc (); ^ /usr/bin/ld: cannot find -lmalloc collect2: error: ld returned 1 exit status configure:17329: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:17338: result: no configure:17351: checking for struct stat.st_blksize configure:17351: gcc -c -g -O2 conftest.c >&5 configure:17351: $? = 0 configure:17351: result: yes configure:17365: checking sys/resource.h usability configure:17365: gcc -c -g -O2 conftest.c >&5 configure:17365: $? = 0 configure:17365: result: yes configure:17365: checking sys/resource.h presence configure:17365: gcc -E conftest.c configure:17365: $? = 0 configure:17365: result: yes configure:17365: checking for sys/resource.h configure:17365: result: yes configure:17377: checking sys/times.h usability configure:17377: gcc -c -g -O2 conftest.c >&5 configure:17377: $? = 0 configure:17377: result: yes configure:17377: checking sys/times.h presence configure:17377: gcc -E conftest.c configure:17377: $? = 0 configure:17377: result: yes configure:17377: checking for sys/times.h configure:17377: result: yes configure:17389: checking malloc.h usability configure:17389: gcc -c -g -O2 conftest.c >&5 configure:17389: $? = 0 configure:17389: result: yes configure:17389: checking malloc.h presence configure:17389: gcc -E conftest.c configure:17389: $? = 0 configure:17389: result: yes configure:17389: checking for malloc.h configure:17389: result: yes configure:17401: checking glob.h usability configure:17401: gcc -c -g -O2 conftest.c >&5 configure:17401: $? = 0 configure:17401: result: yes configure:17401: checking glob.h presence configure:17401: gcc -E conftest.c configure:17401: $? = 0 configure:17401: result: yes configure:17401: checking for glob.h configure:17401: result: yes configure:17413: checking fnmatch.h usability configure:17413: gcc -c -g -O2 conftest.c >&5 configure:17413: $? = 0 configure:17413: result: yes configure:17413: checking fnmatch.h presence configure:17413: gcc -E conftest.c configure:17413: $? = 0 configure:17413: result: yes configure:17413: checking for fnmatch.h configure:17413: result: yes configure:17425: checking wordexp.h usability configure:17425: gcc -c -g -O2 conftest.c >&5 configure:17425: $? = 0 configure:17425: result: yes configure:17425: checking wordexp.h presence configure:17425: gcc -E conftest.c configure:17425: $? = 0 configure:17425: result: yes configure:17425: checking for wordexp.h configure:17425: result: yes configure:17439: checking for mallinfo configure:17439: gcc -o conftest -g -O2 conftest.c >&5 configure:17439: $? = 0 configure:17439: result: yes configure:17452: checking for getrlimit configure:17452: gcc -o conftest -g -O2 conftest.c >&5 configure:17452: $? = 0 configure:17452: result: yes configure:17463: checking for gethostname configure:17463: gcc -o conftest -g -O2 conftest.c >&5 configure:17463: $? = 0 configure:17463: result: yes configure:17531: checking for floor in -lm configure:17556: gcc -o conftest -g -O2 conftest.c -lm >&5 conftest.c:51:6: warning: conflicting types for built-in function 'floor' char floor (); ^ configure:17556: $? = 0 configure:17565: result: yes configure:17578: checking whether isnan is declared configure:17578: gcc -c -g -O2 conftest.c >&5 configure:17578: $? = 0 configure:17578: result: yes configure:17593: checking for sqrtl configure:17593: gcc -o conftest -g -O2 conftest.c -lm >&5 conftest.c:69:6: warning: conflicting types for built-in function 'sqrtl' char sqrtl (); ^ configure:17593: $? = 0 configure:17593: result: yes configure:17604: checking for DATA support configure:17621: result: yes configure:17765: checking if compiler needs -Werror to reject unknown flags configure:17781: gcc -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5 gcc: error: unrecognized command line option '-Wunknown-warning-option' configure:17781: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" | #define USER_NAME "miles" | #define HOST_NAME "W541" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:17786: result: no configure:17852: checking for the pthreads library -lpthreads configure:17890: gcc -o conftest -g -O2 -fopenmp conftest.c -lpthreads -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:17890: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" | #define USER_NAME "miles" | #define HOST_NAME "W541" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:17899: result: no configure:17797: checking whether pthreads work without any flags configure:17890: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5 configure:17890: $? = 0 configure:17899: result: yes configure:17918: checking for joinable pthread attribute configure:17933: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5 configure:17933: $? = 0 configure:17939: result: PTHREAD_CREATE_JOINABLE configure:17949: checking if more special flags are required for pthreads configure:17964: result: no configure:17970: checking for PTHREAD_PRIO_INHERIT configure:17987: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5 configure:17987: $? = 0 configure:17996: result: yes configure:18334: checking zlib.h usability configure:18334: gcc -c -g -O2 -fopenmp conftest.c >&5 conftest.c:83:18: fatal error: zlib.h: No such file or directory compilation terminated. configure:18334: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" | #define USER_NAME "miles" | #define HOST_NAME "W541" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:18334: result: no configure:18334: checking zlib.h presence configure:18334: gcc -E conftest.c conftest.c:50:18: fatal error: zlib.h: No such file or directory compilation terminated. configure:18334: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" | #define USER_NAME "miles" | #define HOST_NAME "W541" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | #include configure:18334: result: no configure:18334: checking for zlib.h configure:18334: result: no configure:18344: checking for library containing deflate configure:18375: gcc -o conftest -g -O2 -fopenmp conftest.c -lm >&5 /tmp/ccWuM4tE.o: In function `main': /mnt/d/cdo2/cdo-1.6.8/conftest.c:61: undefined reference to `deflate' collect2: error: ld returned 1 exit status configure:18375: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" | #define USER_NAME "miles" | #define HOST_NAME "W541" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:18375: gcc -o conftest -g -O2 -fopenmp conftest.c -lz -lm >&5 /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status configure:18375: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.6.8" | #define PACKAGE_STRING "cdo 1.6.8" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.6.8" | #define PACKAGE "cdo" | #define VERSION "1.6.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" | #define USER_NAME "miles" | #define HOST_NAME "W541" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:18392: result: no configure:18582: checking for szlib library configure:18584: result: suppressed configure:18900: checking for hdf5 library configure:18902: result: suppressed configure:19267: checking for NETCDF library configure:19269: result: suppressed configure:19502: checking for the JASPER library configure:19504: result: suppressed configure:19684: checking for the GRIB_API library configure:19686: result: suppressed configure:19695: checking for GRIB support configure:19712: result: yes configure:19718: checking for CGRIBEX support configure:19735: result: yes configure:19741: checking for SERVICE support configure:19758: result: yes configure:19764: checking for EXTRA support configure:19781: result: yes configure:19787: checking for IEG support configure:19804: result: yes configure:19810: checking for FFTW3 support configure:20073: checking for the PROJ library configure:20075: result: suppressed configure:20255: checking for the CURL library configure:20257: result: suppressed configure:20449: checking for the UDUNITS2 library configure:20451: result: suppressed configure:20631: checking for MAGICS library configure:20633: result: suppressed configure:20836: checking for XML2 library configure:20838: result: suppressed configure:20857: checking for build a separate CDI library and link CDO to it configure:20874: result: no configure:20898: checking for building an additional static CDO binary configure:20911: result: no configure:20930: checking if x86/amd64 assembler speaks SSE4.2 configure:20953: gcc -c -g -O2 -fopenmp conftest.c >&5 configure:20953: $? = 0 configure:20956: result: yes configure:20981: checking if x86/amd64 assembler speaks AVX configure:21002: gcc -c -g -O2 -fopenmp conftest.c >&5 configure:21002: $? = 0 configure:21005: result: yes configure:21030: checking if x86/amd64 assembler speaks AVX2 configure:21051: gcc -c -g -O2 -fopenmp conftest.c >&5 configure:21051: $? = 0 configure:21054: result: yes configure:21097: checking for gawk configure:21124: result: gawk configure:21257: checking that generated files are newer than configure configure:21263: result: done configure:21318: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.6.8, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on W541 config.status:1277: creating test/File.test config.status:1277: creating test/Read_grib.test config.status:1277: creating test/Read_netcdf.test config.status:1277: creating test/Copy_netcdf.test config.status:1277: creating test/Cat.test config.status:1277: creating test/Gridarea.test config.status:1277: creating test/Genweights.test config.status:1277: creating test/Remap.test config.status:1277: creating test/Select.test config.status:1277: creating test/Spectral.test config.status:1277: creating test/Timstat.test config.status:1277: creating test/Vertint.test config.status:1277: creating test/Detrend.test config.status:1277: creating test/Arith.test config.status:1277: creating test/Gradsdes.test config.status:1277: creating test/wildcard.test config.status:1277: creating Makefile config.status:1277: creating src/Makefile config.status:1277: creating contrib/Makefile config.status:1277: creating test/Makefile config.status:1277: creating test/data/Makefile config.status:1277: creating cdo.spec config.status:1277: creating cdo.settings config.status:1277: creating src/config.h config.status:1506: executing depfiles commands config.status:1506: executing libtool commands configure:23923: === configuring in libcdi (/mnt/d/cdo2/cdo-1.6.8/libcdi) configure:23986: running /bin/bash ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. configure:24005: CDO is configured with the following options: configure:24024: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=no ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_header_zlib_h=no ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_MANIFEST_TOOL=mt ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=no ac_cv_prog_make_make_set=yes ac_cv_search_deflate=no ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=none am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_gnu_ld=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=1572864 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /mnt/d/cdo2/cdo-1.6.8/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /mnt/d/cdo2/cdo-1.6.8/config/missing autoconf' AUTOHEADER='${SHELL} /mnt/d/cdo2/cdo-1.6.8/config/missing autoheader' AUTOMAKE='${SHELL} /mnt/d/cdo2/cdo-1.6.8/config/missing automake-1.14' AWK='gawk' BUILD_AVX2_TESTS_FALSE='#' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -fopenmp ' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS='' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='' CXXDEPMODE='depmode=none' CXXFLAGS='' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_DATA='yes' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_GRIBAPI='no' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='no' ENABLE_NC4='no' ENABLE_NC4HDF5='no' ENABLE_NETCDF='no' ENABLE_SERVICE='yes' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HDF5_INCLUDE='' HDF5_LIBS='' HDF5_ROOT='' HOST_NAME='W541' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LIBS='' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='' LIBOBJS='' LIBS=' -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /mnt/d/cdo2/cdo-1.6.8/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' NC_CONFIG='' NETCDF_INCLUDE='' NETCDF_LIBS='' NETCDF_ROOT='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.6.8' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.6.8' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/bash' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USER_NAME='miles' VERSION='1.6.8' XML2_LIBS='' ZLIB_INCLUDE='' ZLIB_LIBS=' -lz' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='' am__fastdepCXX_TRUE='#' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /mnt/d/cdo2/cdo-1.6.8/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.6.8" #define PACKAGE_STRING "cdo 1.6.8" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.6.8" #define PACKAGE "cdo" #define VERSION "1.6.8" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_MALLINFO 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (Ubuntu 5.4.0-6ubuntu1~16.04.5) 5.4.0 20160609" #define USER_NAME "miles" #define HOST_NAME "W541" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define HAVE_DECL_ISNAN 1 #define HAVE_SQRTL 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define COMPILER "gcc -g -O2 -fopenmp " configure: exit 0