This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.5.2, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure ## --------- ## ## Platform. ## ## --------- ## hostname = vmodellab uname -m = x86_64 uname -r = 2.6.18-194.26.1.el5 uname -s = Linux uname -v = #1 SMP Fri Oct 29 14:21:16 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/lib64/qt-3.3/bin PATH: /usr/kerberos/sbin PATH: /usr/kerberos/bin PATH: /software/pgi/linux86-64/10.2/bin PATH: /home/software/matlab/bin PATH: /home/software/netcdf/4.1.1/bin PATH: /home/software/mpich2/bin PATH: /home/software/mpich2/sbin PATH: /home/software/gnuplot/bin PATH: /home/software/grib2/wgrib2 PATH: /home/software/grads-2.0.a9/bin PATH: /software/gcc-trunk/bin PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /sbin PATH: /bin PATH: /usr/sbin PATH: /usr/bin PATH: /root/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2497: checking build system type configure:2511: result: x86_64-unknown-linux-gnu configure:2531: checking host system type configure:2544: result: x86_64-unknown-linux-gnu configure:2582: checking for a BSD-compatible install configure:2650: result: /usr/bin/install -c configure:2661: checking whether build environment is sane configure:2711: result: yes configure:2852: checking for a thread-safe mkdir -p configure:2891: result: /bin/mkdir -p configure:2904: checking for gawk configure:2920: found /bin/gawk configure:2931: result: gawk configure:2942: checking whether make sets $(MAKE) configure:2964: result: yes configure:3047: checking whether to enable maintainer-specific portions of Makefiles configure:3056: result: no configure:3071: setting up libtool configure:3119: checking how to print strings configure:3146: result: printf configure:3179: checking for style of include used by make configure:3207: result: GNU configure:3277: checking for gcc configure:3293: found /software/gcc-trunk/bin/gcc configure:3304: result: gcc configure:3533: checking for C compiler version configure:3542: gcc --version >&5 gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816] Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3553: $? = 0 configure:3542: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/software/gcc-trunk/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.0/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-trunk-source/gcc/configure --enable-languages=c,c++,fortran --enable-checking=release --disable-bootstrap --disable-libmudflap --enable-libgomp --enable-lto --enable-gold --with-plugin-ld=/usr/bin/gold --prefix=/usr/local/gcc-trunk Thread model: posix gcc version 4.7.0 20110727 (experimental) [trunk revision 176816] (GCC) configure:3553: $? = 0 configure:3542: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3553: $? = 1 configure:3542: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3553: $? = 1 configure:3573: checking whether the C compiler works configure:3595: gcc conftest.c >&5 configure:3599: $? = 0 configure:3647: result: yes configure:3650: checking for C compiler default output file name configure:3652: result: a.out configure:3658: checking for suffix of executables configure:3665: gcc -o conftest conftest.c >&5 configure:3669: $? = 0 configure:3691: result: configure:3713: checking whether we are cross compiling configure:3721: gcc -o conftest conftest.c >&5 configure:3725: $? = 0 configure:3732: ./conftest configure:3736: $? = 0 configure:3751: result: no configure:3756: checking for suffix of object files configure:3778: gcc -c conftest.c >&5 configure:3782: $? = 0 configure:3803: result: o configure:3807: checking whether we are using the GNU C compiler configure:3826: gcc -c conftest.c >&5 configure:3826: $? = 0 configure:3835: result: yes configure:3844: checking whether gcc accepts -g configure:3864: gcc -c -g conftest.c >&5 configure:3864: $? = 0 configure:3905: result: yes configure:3922: checking for gcc option to accept ISO C89 configure:3986: gcc -c -g -O2 conftest.c >&5 configure:3986: $? = 0 configure:3999: result: none needed configure:4021: checking dependency style of gcc configure:4131: result: gcc3 configure:4146: checking for a sed that does not truncate output configure:4210: result: /bin/sed configure:4228: checking for grep that handles long lines and -e configure:4286: result: /bin/grep configure:4291: checking for egrep configure:4353: result: /bin/grep -E configure:4358: checking for fgrep configure:4420: result: /bin/grep -F configure:4455: checking for ld used by gcc configure:4522: result: /usr/bin/ld configure:4529: checking if the linker (/usr/bin/ld) is GNU ld configure:4544: result: yes configure:4556: checking for BSD- or MS-compatible name lister (nm) configure:4605: result: /usr/bin/nm -B configure:4735: checking the name lister (/usr/bin/nm -B) interface configure:4742: gcc -c -g -O2 conftest.c >&5 configure:4745: /usr/bin/nm -B "conftest.o" configure:4748: output 0000000000000000 B some_variable configure:4755: result: BSD nm configure:4758: checking whether ln -s works configure:4762: result: yes configure:4770: checking the maximum length of command line arguments configure:4895: result: 98304 configure:4912: checking whether the shell understands some XSI constructs configure:4922: result: yes configure:4926: checking whether the shell understands "+=" configure:4932: result: yes configure:4967: checking for /usr/bin/ld option to reload object files configure:4974: result: -r configure:5043: checking for objdump configure:5059: found /usr/bin/objdump configure:5070: result: objdump configure:5102: checking how to recognize dependent libraries configure:5304: result: pass_all configure:5364: checking for ar configure:5380: found /usr/bin/ar configure:5391: result: ar configure:5469: checking for strip configure:5485: found /usr/bin/strip configure:5496: result: strip configure:5568: checking for ranlib configure:5584: found /usr/bin/ranlib configure:5595: result: ranlib configure:5697: checking command to parse /usr/bin/nm -B output from gcc object configure:5815: gcc -c -g -O2 conftest.c >&5 configure:5818: $? = 0 configure:5822: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm configure:5825: $? = 0 configure:5879: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:5882: $? = 0 configure:5920: result: ok configure:6016: gcc -c -g -O2 conftest.c >&5 configure:6019: $? = 0 configure:6761: checking how to run the C preprocessor configure:6792: gcc -E conftest.c configure:6792: $? = 0 configure:6806: gcc -E conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:6806: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | /* end confdefs.h. */ | #include configure:6831: result: gcc -E configure:6851: gcc -E conftest.c configure:6851: $? = 0 configure:6865: gcc -E conftest.c conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:6865: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | /* end confdefs.h. */ | #include configure:6894: checking for ANSI C header files configure:6914: gcc -c -g -O2 conftest.c >&5 configure:6914: $? = 0 configure:6987: gcc -o conftest -g -O2 conftest.c >&5 configure:6987: $? = 0 configure:6987: ./conftest configure:6987: $? = 0 configure:6998: result: yes configure:7011: checking for sys/types.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for sys/stat.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for stdlib.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for string.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for memory.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for strings.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for inttypes.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for stdint.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7011: checking for unistd.h configure:7011: gcc -c -g -O2 conftest.c >&5 configure:7011: $? = 0 configure:7011: result: yes configure:7025: checking for dlfcn.h configure:7025: gcc -c -g -O2 conftest.c >&5 configure:7025: $? = 0 configure:7025: result: yes configure:7212: checking for objdir configure:7227: result: .libs configure:7498: checking if gcc supports -fno-rtti -fno-exceptions configure:7516: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default] configure:7520: $? = 0 configure:7533: result: no configure:7553: checking for gcc option to produce PIC configure:7838: result: -fPIC -DPIC configure:7850: checking if gcc PIC flag -fPIC -DPIC works configure:7868: gcc -c -g -O2 -fPIC -DPIC -DPIC conftest.c >&5 configure:7872: $? = 0 configure:7885: result: yes configure:7909: checking if gcc static flag -static works configure:7937: result: yes configure:7952: checking if gcc supports -c -o file.o configure:7973: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:7977: $? = 0 configure:7999: result: yes configure:8007: checking if gcc supports -c -o file.o configure:8054: result: yes configure:8087: checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:9162: result: yes configure:9199: checking whether -lc should be explicitly linked in configure:9207: gcc -c -g -O2 conftest.c >&5 configure:9210: $? = 0 configure:9225: gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:9228: $? = 0 configure:9242: result: no configure:9407: checking dynamic linker characteristics configure:9862: gcc -o conftest -g -O2 -Wl,-rpath -Wl,/foo conftest.c >&5 configure:9862: $? = 0 configure:10084: result: GNU/Linux ld.so configure:10191: checking how to hardcode library paths into programs configure:10216: result: immediate configure:10756: checking whether stripping libraries is possible configure:10761: result: yes configure:10796: checking if libtool supports shared libraries configure:10798: result: yes configure:10801: checking whether to build shared libraries configure:10822: result: yes configure:10825: checking whether to build static libraries configure:10829: result: yes configure:10908: checking for gcc configure:10935: result: gcc configure:10957: checking for gcc option to accept ISO C99 configure:11106: gcc -c -g -O2 conftest.c >&5 conftest.c:73:29: error: expected ';', ',' or ')' before 'text' conftest.c: In function 'main': conftest.c:127:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' conftest.c:127:18: error: 'newvar' undeclared (first use in this function) conftest.c:127:18: note: each undeclared identifier is reported only once for each function it appears in conftest.c:137:3: error: 'for' loop initial declarations are only allowed in C99 mode conftest.c:137:3: note: use option -std=c99 or -std=gnu99 to compile your code configure:11106: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:11106: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:11106: $? = 0 configure:11126: result: -std=gnu99 configure:11135: checking whether gcc -std=gnu99 and cc understand -c and -o together configure:11166: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11170: $? = 0 configure:11176: gcc -std=gnu99 -c conftest.c -o conftest2.o >&5 configure:11180: $? = 0 configure:11191: cc -c conftest.c >&5 configure:11195: $? = 0 configure:11203: cc -c conftest.c -o conftest2.o >&5 configure:11207: $? = 0 configure:11213: cc -c conftest.c -o conftest2.o >&5 configure:11217: $? = 0 configure:11235: result: yes configure:11304: checking for ar configure:11331: result: ar configure:11488: checking for ld configure:11515: result: /usr/bin/ld -m elf_x86_64 configure:11580: checking for nm configure:11607: result: /usr/bin/nm -B configure:11672: checking for ar configure:11699: result: ar configure:11764: checking for as configure:11780: found /usr/bin/as configure:11791: result: as configure:11856: checking for dlltool configure:11886: result: no configure:11948: checking for objdump configure:11975: result: objdump configure:12040: checking for strip configure:12067: result: strip configure:12132: checking for ranlib configure:12159: result: ranlib configure:12240: checking for g++ configure:12256: found /software/gcc-trunk/bin/g++ configure:12267: result: g++ configure:12294: checking for C++ compiler version configure:12303: g++ --version >&5 g++ (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816] Copyright (C) 2011 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:12314: $? = 0 configure:12303: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/software/gcc-trunk/bin/../libexec/gcc/x86_64-unknown-linux-gnu/4.7.0/lto-wrapper Target: x86_64-unknown-linux-gnu Configured with: ../gcc-trunk-source/gcc/configure --enable-languages=c,c++,fortran --enable-checking=release --disable-bootstrap --disable-libmudflap --enable-libgomp --enable-lto --enable-gold --with-plugin-ld=/usr/bin/gold --prefix=/usr/local/gcc-trunk Thread model: posix gcc version 4.7.0 20110727 (experimental) [trunk revision 176816] (GCC) configure:12314: $? = 0 configure:12303: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:12314: $? = 1 configure:12303: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion' g++: fatal error: no input files compilation terminated. configure:12314: $? = 1 configure:12318: checking whether we are using the GNU C++ compiler configure:12337: g++ -c conftest.cpp >&5 configure:12337: $? = 0 configure:12346: result: yes configure:12355: checking whether g++ accepts -g configure:12375: g++ -c -g conftest.cpp >&5 configure:12375: $? = 0 configure:12416: result: yes configure:12441: checking dependency style of g++ configure:12551: result: gcc3 configure:12574: checking how to run the C++ preprocessor configure:12601: g++ -E conftest.cpp configure:12601: $? = 0 configure:12615: g++ -E conftest.cpp conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:12615: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12640: result: g++ -E configure:12660: g++ -E conftest.cpp configure:12660: $? = 0 configure:12674: g++ -E conftest.cpp conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory compilation terminated. configure:12674: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:12842: checking for ld used by g++ configure:12909: result: /usr/bin/ld -m elf_x86_64 configure:12916: checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld configure:12931: result: yes configure:12986: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:13918: result: yes configure:13946: g++ -c -g -O2 conftest.cpp >&5 configure:13949: $? = 0 configure:14131: checking for g++ option to produce PIC configure:14453: result: -fPIC -DPIC configure:14462: checking if g++ PIC flag -fPIC -DPIC works configure:14480: g++ -c -g -O2 -fPIC -DPIC -DPIC conftest.cpp >&5 configure:14484: $? = 0 configure:14497: result: yes configure:14518: checking if g++ static flag -static works configure:14546: result: yes configure:14558: checking if g++ supports -c -o file.o configure:14579: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:14583: $? = 0 configure:14605: result: yes configure:14610: checking if g++ supports -c -o file.o configure:14657: result: yes configure:14687: checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries configure:14715: result: yes configure:14858: checking dynamic linker characteristics configure:15469: result: GNU/Linux ld.so configure:15522: checking how to hardcode library paths into programs configure:15547: result: immediate configure:15598: checking for special C compiler options needed for large files configure:15643: result: no configure:15649: checking for _FILE_OFFSET_BITS value needed for large files configure:15674: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15674: $? = 0 configure:15706: result: no configure:15797: checking for stdlib.h configure:15797: result: yes configure:15797: checking for unistd.h configure:15797: result: yes configure:15797: checking for sys/param.h configure:15797: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:15797: $? = 0 configure:15797: result: yes configure:15817: checking for getpagesize configure:15817: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15817: $? = 0 configure:15817: result: yes configure:15826: checking for working mmap configure:15973: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:15973: $? = 0 configure:15973: ./conftest configure:15973: $? = 0 configure:15983: result: yes configure:15994: checking for malloc in -lmalloc configure:16019: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:35:6: warning: conflicting types for built-in function 'malloc' [enabled by default] /usr/bin/ld: cannot find -lmalloc collect2: error: ld returned 1 exit status configure:16019: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:16028: result: no configure:16041: checking for struct stat.st_blksize configure:16041: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16041: $? = 0 configure:16041: result: yes configure:16055: checking sys/resource.h usability configure:16055: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16055: $? = 0 configure:16055: result: yes configure:16055: checking sys/resource.h presence configure:16055: gcc -E conftest.c configure:16055: $? = 0 configure:16055: result: yes configure:16055: checking for sys/resource.h configure:16055: result: yes configure:16067: checking sys/times.h usability configure:16067: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16067: $? = 0 configure:16067: result: yes configure:16067: checking sys/times.h presence configure:16067: gcc -E conftest.c configure:16067: $? = 0 configure:16067: result: yes configure:16067: checking for sys/times.h configure:16067: result: yes configure:16079: checking malloc.h usability configure:16079: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:16079: $? = 0 configure:16079: result: yes configure:16079: checking malloc.h presence configure:16079: gcc -E conftest.c configure:16079: $? = 0 configure:16079: result: yes configure:16079: checking for malloc.h configure:16079: result: yes configure:16093: checking for mallinfo configure:16093: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16093: $? = 0 configure:16093: result: yes configure:16106: checking for isnan configure:16106: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 conftest.c:56:6: warning: conflicting types for built-in function 'isnan' [enabled by default] configure:16106: $? = 0 configure:16106: result: yes configure:16117: checking for getrlimit configure:16117: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16117: $? = 0 configure:16117: result: yes configure:16128: checking for gethostname configure:16128: gcc -std=gnu99 -o conftest -g -O2 conftest.c >&5 configure:16128: $? = 0 configure:16128: result: yes configure:16194: checking for floor in -lm configure:16219: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 conftest.c:47:6: warning: conflicting types for built-in function 'floor' [enabled by default] configure:16219: $? = 0 configure:16228: result: yes configure:16430: checking for the pthreads library -lpthreads configure:16468: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lpthreads -lm >&5 /usr/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:16468: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" | #define USER_NAME "root" | #define HOST_NAME "vmodellab" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16477: result: no configure:16375: checking whether pthreads work without any flags configure:16468: gcc -std=gnu99 -o conftest -g -O2 conftest.c -lm >&5 /tmp/ccgYxbGp.o: In function `main': /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/conftest.c:48: undefined reference to `pthread_create' /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/conftest.c:49: undefined reference to `pthread_join' /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/conftest.c:51: undefined reference to `__pthread_register_cancel' /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/conftest.c:52: undefined reference to `__pthread_unregister_cancel' collect2: error: ld returned 1 exit status configure:16468: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" | #define USER_NAME "root" | #define HOST_NAME "vmodellab" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16477: result: no configure:16380: checking whether pthreads work with -Kthread configure:16468: gcc -std=gnu99 -o conftest -g -O2 -Kthread conftest.c -lm >&5 gcc: error: unrecognized command line option '-Kthread' configure:16468: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" | #define USER_NAME "root" | #define HOST_NAME "vmodellab" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16477: result: no configure:16380: checking whether pthreads work with -kthread configure:16468: gcc -std=gnu99 -o conftest -g -O2 -kthread conftest.c -lm >&5 gcc: error: unrecognized command line option '-kthread' configure:16468: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" | #define USER_NAME "root" | #define HOST_NAME "vmodellab" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16477: result: no configure:16430: checking for the pthreads library -llthread configure:16468: gcc -std=gnu99 -o conftest -g -O2 conftest.c -llthread -lm >&5 /usr/bin/ld: cannot find -llthread collect2: error: ld returned 1 exit status configure:16468: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" | #define USER_NAME "root" | #define HOST_NAME "vmodellab" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include | static void routine(void* a) {a=0;} | static void* start_routine(void* a) {return a;} | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th,0,start_routine,0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0); | ; | return 0; | } configure:16477: result: no configure:16380: checking whether pthreads work with -pthread configure:16468: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:16468: $? = 0 configure:16477: result: yes configure:16496: checking for joinable pthread attribute configure:16511: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:16511: $? = 0 configure:16517: result: PTHREAD_CREATE_JOINABLE configure:16527: checking if more special flags are required for pthreads configure:16534: result: no configure:16859: checking zlib.h usability configure:16859: gcc -std=gnu99 -c -g -O2 -pthread conftest.c >&5 configure:16859: $? = 0 configure:16859: result: yes configure:16859: checking zlib.h presence configure:16859: gcc -E conftest.c configure:16859: $? = 0 configure:16859: result: yes configure:16859: checking for zlib.h configure:16859: result: yes configure:16869: checking for library containing deflate configure:16900: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lm >&5 /tmp/ccIgVMNZ.o: In function `main': /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/conftest.c:54: undefined reference to `deflate' collect2: error: ld returned 1 exit status configure:16900: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.5.2" | #define PACKAGE_STRING "cdo 1.5.2" | #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" | #define PACKAGE_URL "" | #define PACKAGE "cdo" | #define VERSION "1.5.2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_ISNAN 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" | #define USER_NAME "root" | #define HOST_NAME "vmodellab" | #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" | #define HAVE_LIBM 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_ZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char deflate (); | int | main () | { | return deflate (); | ; | return 0; | } configure:16900: gcc -std=gnu99 -o conftest -g -O2 -pthread conftest.c -lz -lm >&5 configure:16900: $? = 0 configure:16917: result: -lz configure:17108: checking for szlib library configure:17110: result: suppressed configure:17427: checking for hdf5 library configure:17429: result: suppressed configure:17610: checking for NETCDF library configure:17612: result: suppressed configure:17776: checking for the JASPER library configure:17778: result: suppressed configure:17954: checking for the GRIB_API library configure:17956: result: suppressed configure:17962: checking for GRIB support configure:17979: result: yes configure:17985: checking for CGRIBEX support configure:18002: result: yes configure:18008: checking for SERVICE support configure:18025: result: yes configure:18031: checking for EXTRA support configure:18048: result: yes configure:18054: checking for IEG support configure:18071: result: yes configure:18251: checking for the PROJ library configure:18253: result: suppressed configure:18264: checking for build a separate CDI library and link CDO to it configure:18281: result: no configure:18305: checking for building an additional static CDO binary configure:18318: result: no configure:18493: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.5.2, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on vmodellab config.status:1211: creating Makefile config.status:1211: creating src/Makefile config.status:1211: creating contrib/Makefile config.status:1211: creating cdo.spec config.status:1211: creating cdo.settings config.status:1211: creating src/config.h config.status:1392: src/config.h is unchanged config.status:1440: executing depfiles commands config.status:1440: executing libtool commands configure:21065: === configuring in libcdi (/archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/libcdi) configure:21128: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' --cache-file=/dev/null --srcdir=. configure:21147: CDO is configured with the following options: configure:21166: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_isnan=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_header_dlfcn_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_LD='/usr/bin/ld -m elf_x86_64' ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_deflate=-lz ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/bin/ld lt_cv_path_LDCXX='/usr/bin/ld -m elf_x86_64' lt_cv_path_NM='/usr/bin/nm -B' lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_shlibpath_overrides_runpath=no lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=98304 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/missing --run tar' AR='ar' AS='as' AUTOCONF='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/missing --run autoconf' AUTOHEADER='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/missing --run autoheader' AUTOMAKE='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/missing --run automake-1.11' AWK='gawk' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -pthread' CLDFLAGS='' CLIBS='' CPP='gcc -E' CPPFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL=':' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_IEG='yes' ENABLE_SERVICE='yes' EXEEXT='' FCFLAGS='' FGREP='/bin/grep -F' GREP='/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LDFLAGS='' HDF5_INCLUDE='' HDF5_LDFLAGS='' HOST_NAME='vmodellab' INCLUDES='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' JASPER_LDFLAGS='' LD='/usr/bin/ld -m elf_x86_64' LDFLAGS='' LIBOBJS='' LIBS='-lz -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/missing --run makeinfo' MKDIR_P='/bin/mkdir -p' NETCDF_INCLUDE='' NETCDF_LDFLAGS='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://code.zmaw.de/projects/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.5.2' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.5.2' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='-pthread' PTHREAD_LIBS='' RANLIB='ranlib' SED='/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-unknown-linux-gnu' SZLIB_INCLUDE='' SZLIB_LDFLAGS='' THREADS_INCLUDE='' THREADS_LDFLAGS='' USER_NAME='root' VERSION='1.5.2' ZLIB_INCLUDE='' ZLIB_LDFLAGS=' -lz' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /archive/co-opBERG/lindsay/cdo-1.5.2/cdo-1.5.2/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.5.2" #define PACKAGE_STRING "cdo 1.5.2" #define PACKAGE_BUGREPORT "http://code.zmaw.de/projects/cdo" #define PACKAGE_URL "" #define PACKAGE "cdo" #define VERSION "1.5.2" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_MALLINFO 1 #define HAVE_ISNAN 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (GCC) 4.7.0 20110727 (experimental) [trunk revision 176816]" #define USER_NAME "root" #define HOST_NAME "vmodellab" #define SYSTEM_TYPE "x86_64-unknown-linux-gnu" #define HAVE_LIBM 1 #define HAVE_LIBPTHREAD 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define COMPILER "gcc -std=gnu99 -g -O2 -pthread" configure: exit 0