This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.9.5rc1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure -prefix=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz CFLAGS=-fPIC -with-netcdf=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz -with-jasper=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz -with-hdf5=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz -with-grib_api=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz -with-proj=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz ## --------- ## ## Platform. ## ## --------- ## hostname = MacBook-Pro-2.iiasa.ac.at uname -m = x86_64 uname -r = 15.6.0 uname -s = Darwin uname -v = Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 15.6.0: Thu Jun 23 18:25:34 PDT 2016; root:xnu-3248.60.10~1/RELEASE_X86_64 Kernel configured for up to 4 processors. 2 processors are physically available. 4 processors are logically available. Processor type: x86_64h (Intel x86-64h Haswell) Processors active: 0 1 2 3 Primary memory available: 8.00 gigabytes Default processor set: 275 tasks, 1375 threads, 4 processors Load average: 2.89, Mach factor: 1.62 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Library/Frameworks/Python.framework/Versions/2.7/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /usr/local/bin PATH: /usr/texbin PATH: /Users/edoardobeltrame/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/bin PATH: /Users/edoardobeltrame/Library/Developer/CommandLineTools/usr/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2875: checking build system type configure:2889: result: x86_64-apple-darwin15.6.0 configure:2909: checking host system type configure:2922: result: x86_64-apple-darwin15.6.0 configure:2961: checking for a BSD-compatible install configure:3029: result: /usr/bin/install -c configure:3040: checking whether build environment is sane configure:3095: result: yes configure:3246: checking for a thread-safe mkdir -p configure:3285: result: config/install-sh -c -d configure:3292: checking for gawk configure:3322: result: no configure:3292: checking for mawk configure:3322: result: no configure:3292: checking for nawk configure:3322: result: no configure:3292: checking for awk configure:3308: found /usr/bin/awk configure:3319: result: awk configure:3330: checking whether make sets $(MAKE) configure:3352: result: yes configure:3381: checking whether make supports nested variables configure:3398: result: yes configure:3527: checking whether to enable maintainer-specific portions of Makefiles configure:3536: result: no configure:3563: checking for style of include used by make configure:3591: result: GNU configure:3662: checking for gcc configure:3678: found /usr/bin/gcc configure:3689: result: gcc configure:3918: checking for C compiler version configure:3927: gcc --version >&5 Apple LLVM version 8.0.0 (clang-800.0.42.1) Target: x86_64-apple-darwin15.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 configure:3938: $? = 0 configure:3927: gcc -v >&5 Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 8.0.0 (clang-800.0.42.1) Target: x86_64-apple-darwin15.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin configure:3938: $? = 0 configure:3927: gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3938: $? = 1 configure:3927: gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:3938: $? = 1 configure:3958: checking whether the C compiler works configure:3980: gcc -fPIC conftest.c >&5 configure:3984: $? = 0 configure:4032: result: yes configure:4035: checking for C compiler default output file name configure:4037: result: a.out configure:4043: checking for suffix of executables configure:4050: gcc -o conftest -fPIC conftest.c >&5 configure:4054: $? = 0 configure:4076: result: configure:4098: checking whether we are cross compiling configure:4106: gcc -o conftest -fPIC conftest.c >&5 configure:4110: $? = 0 configure:4117: ./conftest configure:4121: $? = 0 configure:4136: result: no configure:4141: checking for suffix of object files configure:4163: gcc -c -fPIC conftest.c >&5 configure:4167: $? = 0 configure:4188: result: o configure:4192: checking whether we are using the GNU C compiler configure:4211: gcc -c -fPIC conftest.c >&5 configure:4211: $? = 0 configure:4220: result: yes configure:4229: checking whether gcc accepts -g configure:4249: gcc -c -g conftest.c >&5 configure:4249: $? = 0 configure:4290: result: yes configure:4307: checking for gcc option to accept ISO C89 configure:4370: gcc -c -fPIC conftest.c >&5 configure:4370: $? = 0 configure:4383: result: none needed configure:4408: checking whether gcc understands -c and -o together configure:4430: gcc -c conftest.c -o conftest2.o configure:4433: $? = 0 configure:4430: gcc -c conftest.c -o conftest2.o configure:4433: $? = 0 configure:4445: result: yes configure:4464: checking dependency style of gcc configure:4575: result: gcc3 configure:4640: checking for ar configure:4656: found /usr/bin/ar configure:4667: result: ar configure:4693: checking the archiver (ar) interface configure:4709: gcc -c -fPIC conftest.c >&5 configure:4709: $? = 0 configure:4711: ar cru libconftest.a conftest.o >&5 configure:4714: $? = 0 configure:4742: result: ar configure:4763: setting up libtool configure:4811: checking how to print strings configure:4838: result: printf configure:4859: checking for a sed that does not truncate output configure:4923: result: /usr/bin/sed configure:4941: checking for grep that handles long lines and -e configure:4999: result: /usr/bin/grep configure:5004: checking for egrep configure:5066: result: /usr/bin/grep -E configure:5071: checking for fgrep configure:5133: result: /usr/bin/grep -F configure:5168: checking for ld used by gcc configure:5235: result: /Library/Developer/CommandLineTools/usr/bin/ld configure:5242: checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld configure:5257: result: no configure:5269: checking for BSD- or MS-compatible name lister (nm) configure:5323: result: /usr/bin/nm -B configure:5453: checking the name lister (/usr/bin/nm -B) interface configure:5460: gcc -c -fPIC conftest.c >&5 configure:5463: /usr/bin/nm -B "conftest.o" configure:5466: output 0000000000000000 S _some_variable configure:5473: result: BSD nm configure:5476: checking whether ln -s works configure:5480: result: yes configure:5488: checking the maximum length of command line arguments configure:5619: result: 196608 configure:5667: checking how to convert x86_64-apple-darwin15.6.0 file names to x86_64-apple-darwin15.6.0 format configure:5707: result: func_convert_file_noop configure:5714: checking how to convert x86_64-apple-darwin15.6.0 file names to toolchain format configure:5734: result: func_convert_file_noop configure:5741: checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files configure:5748: result: -r configure:5822: checking for objdump configure:5852: result: no configure:5881: checking how to recognize dependent libraries configure:6081: result: pass_all configure:6166: checking for dlltool configure:6196: result: no configure:6226: checking how to associate runtime and link libraries configure:6253: result: printf %s\n configure:6377: checking for archiver @FILE support configure:6394: gcc -c -fPIC conftest.c >&5 configure:6394: $? = 0 configure:6397: ar cru libconftest.a @conftest.lst >&5 ar: @conftest.lst: No such file or directory configure:6400: $? = 1 configure:6420: result: no configure:6478: checking for strip configure:6494: found /usr/bin/strip configure:6505: result: strip configure:6577: checking for ranlib configure:6593: found /usr/bin/ranlib configure:6604: result: ranlib configure:6706: checking command to parse /usr/bin/nm -B output from gcc object configure:6859: gcc -c -fPIC conftest.c >&5 configure:6862: $? = 0 configure:6866: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6869: $? = 0 cannot find nm_test_var in conftest.nm configure:6859: gcc -c -fPIC conftest.c >&5 configure:6862: $? = 0 configure:6866: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6869: $? = 0 configure:6935: gcc -o conftest -fPIC conftest.c conftstm.o >&5 configure:6938: $? = 0 configure:6976: result: ok configure:7023: checking for sysroot configure:7053: result: no configure:7060: checking for a working dd configure:7098: result: /bin/dd configure:7102: checking how to truncate binary pipes configure:7117: result: /bin/dd bs=4096 count=1 configure:7446: checking for mt configure:7476: result: no configure:7496: checking if : is a manifest tool configure:7502: : '-?' configure:7510: result: no configure:7566: checking for dsymutil configure:7582: found /usr/bin/dsymutil configure:7593: result: dsymutil configure:7658: checking for nmedit configure:7674: found /usr/bin/nmedit configure:7685: result: nmedit configure:7750: checking for lipo configure:7766: found /usr/bin/lipo configure:7777: result: lipo configure:7842: checking for otool configure:7858: found /usr/bin/otool configure:7869: result: otool configure:7934: checking for otool64 configure:7964: result: no configure:8009: checking for -single_module linker flag gcc -fPIC -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c configure:8042: result: yes configure:8045: checking for -exported_symbols_list linker flag configure:8065: gcc -o conftest -fPIC -Wl,-exported_symbols_list,conftest.sym conftest.c >&5 configure:8065: $? = 0 configure:8075: result: yes configure:8078: checking for -force_load linker flag gcc -fPIC -c -o conftest.o conftest.c ar cru libconftest.a conftest.o ranlib libconftest.a gcc -fPIC -o conftest conftest.c -Wl,-force_load,./libconftest.a configure:8110: result: yes configure:8187: checking how to run the C preprocessor configure:8218: gcc -E conftest.c configure:8218: $? = 0 configure:8232: gcc -E conftest.c conftest.c:12:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:8232: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | /* end confdefs.h. */ | #include configure:8257: result: gcc -E configure:8277: gcc -E conftest.c configure:8277: $? = 0 configure:8291: gcc -E conftest.c conftest.c:12:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:8291: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | /* end confdefs.h. */ | #include configure:8320: checking for ANSI C header files configure:8340: gcc -c -fPIC conftest.c >&5 configure:8340: $? = 0 configure:8413: gcc -o conftest -fPIC conftest.c >&5 configure:8413: $? = 0 configure:8413: ./conftest configure:8413: $? = 0 configure:8424: result: yes configure:8437: checking for sys/types.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for sys/stat.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for stdlib.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for string.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for memory.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for strings.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for inttypes.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for stdint.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8437: checking for unistd.h configure:8437: gcc -c -fPIC conftest.c >&5 configure:8437: $? = 0 configure:8437: result: yes configure:8451: checking for dlfcn.h configure:8451: gcc -c -fPIC conftest.c >&5 configure:8451: $? = 0 configure:8451: result: yes configure:8707: checking for objdir configure:8722: result: .libs configure:8986: checking if gcc supports -fno-rtti -fno-exceptions configure:9004: gcc -c -fPIC -fno-rtti -fno-exceptions conftest.c >&5 configure:9008: $? = 0 configure:9021: result: yes configure:9379: checking for gcc option to produce PIC configure:9386: result: -fno-common -DPIC configure:9394: checking if gcc PIC flag -fno-common -DPIC works configure:9412: gcc -c -fPIC -fno-common -DPIC -DPIC conftest.c >&5 configure:9416: $? = 0 configure:9429: result: yes configure:9458: checking if gcc static flag -static works configure:9486: result: no configure:9501: checking if gcc supports -c -o file.o configure:9522: gcc -c -fPIC -o out/conftest2.o conftest.c >&5 configure:9526: $? = 0 configure:9548: result: yes configure:9556: checking if gcc supports -c -o file.o configure:9603: result: yes configure:9636: checking whether the gcc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries configure:10895: result: yes configure:11135: checking dynamic linker characteristics configure:11953: result: darwin15.6.0 dyld configure:12075: checking how to hardcode library paths into programs configure:12100: result: immediate configure:12648: checking whether stripping libraries is possible configure:12662: result: yes configure:12688: checking if libtool supports shared libraries configure:12690: result: yes configure:12693: checking whether to build shared libraries configure:12718: result: yes configure:12721: checking whether to build static libraries configure:12725: result: yes configure:12810: checking for bash configure:12840: result: /bin/sh configure:12907: checking for gcc configure:12934: result: gcc configure:12999: checking for g++ configure:13015: found /usr/bin/g++ configure:13026: result: g++ configure:13048: checking for gcc option to accept ISO C99 configure:13197: gcc -c -fPIC conftest.c >&5 configure:13197: $? = 0 configure:13210: result: none needed configure:13338: checking for C++ compiler version configure:13347: g++ --version >&5 Apple LLVM version 8.0.0 (clang-800.0.42.1) Target: x86_64-apple-darwin15.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 configure:13358: $? = 0 configure:13347: g++ -v >&5 Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 8.0.0 (clang-800.0.42.1) Target: x86_64-apple-darwin15.6.0 Thread model: posix InstalledDir: /Library/Developer/CommandLineTools/usr/bin configure:13358: $? = 0 configure:13347: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:13358: $? = 1 configure:13347: g++ -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:13358: $? = 1 configure:13362: checking whether we are using the GNU C++ compiler configure:13381: g++ -c conftest.cpp >&5 configure:13381: $? = 0 configure:13390: result: yes configure:13399: checking whether g++ accepts -g configure:13419: g++ -c -g conftest.cpp >&5 configure:13419: $? = 0 configure:13460: result: yes configure:13485: checking dependency style of g++ configure:13596: result: gcc3 configure:13629: checking how to run the C++ preprocessor configure:13656: g++ -E conftest.cpp configure:13656: $? = 0 configure:13670: g++ -E conftest.cpp conftest.cpp:24:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:13670: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13695: result: g++ -E configure:13715: g++ -E conftest.cpp configure:13715: $? = 0 configure:13729: g++ -E conftest.cpp conftest.cpp:24:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:13729: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include configure:13891: checking for ld used by g++ configure:13958: result: /Library/Developer/CommandLineTools/usr/bin/ld configure:13965: checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld configure:13980: result: no configure:14035: checking whether the g++ linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries configure:15108: result: yes configure:15144: g++ -c -g -O2 conftest.cpp >&5 configure:15147: $? = 0 configure:15628: checking for g++ option to produce PIC configure:15635: result: -fno-common -DPIC configure:15643: checking if g++ PIC flag -fno-common -DPIC works configure:15661: g++ -c -g -O2 -fno-common -DPIC -DPIC conftest.cpp >&5 configure:15665: $? = 0 configure:15678: result: yes configure:15701: checking if g++ static flag -static works configure:15729: result: no configure:15741: checking if g++ supports -c -o file.o configure:15762: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:15766: $? = 0 configure:15788: result: yes configure:15793: checking if g++ supports -c -o file.o configure:15840: result: yes configure:15870: checking whether the g++ linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries configure:15910: result: yes configure:16051: checking dynamic linker characteristics configure:16796: result: darwin15.6.0 dyld configure:16861: checking how to hardcode library paths into programs configure:16886: result: immediate configure:16979: checking for g77 configure:17009: result: no configure:16979: checking for xlf configure:17009: result: no configure:16979: checking for f77 configure:17009: result: no configure:16979: checking for frt configure:17009: result: no configure:16979: checking for pgf77 configure:17009: result: no configure:16979: checking for cf77 configure:17009: result: no configure:16979: checking for fort77 configure:17009: result: no configure:16979: checking for fl32 configure:17009: result: no configure:16979: checking for af77 configure:17009: result: no configure:16979: checking for xlf90 configure:17009: result: no configure:16979: checking for f90 configure:17009: result: no configure:16979: checking for pgf90 configure:17009: result: no configure:16979: checking for pghpf configure:17009: result: no configure:16979: checking for epcf90 configure:17009: result: no configure:16979: checking for gfortran configure:17009: result: no configure:16979: checking for g95 configure:17009: result: no configure:16979: checking for xlf95 configure:17009: result: no configure:16979: checking for f95 configure:17009: result: no configure:16979: checking for fort configure:17009: result: no configure:16979: checking for ifort configure:17009: result: no configure:16979: checking for ifc configure:17009: result: no configure:16979: checking for efc configure:17009: result: no configure:16979: checking for pgfortran configure:17009: result: no configure:16979: checking for pgf95 configure:17009: result: no configure:16979: checking for lf95 configure:17009: result: no configure:16979: checking for ftn configure:17009: result: no configure:16979: checking for nagfor configure:17009: result: no configure:17032: checking for Fortran 77 compiler version configure:17041: --version >&5 ./configure: line 17043: --version: command not found configure:17052: $? = 127 configure:17041: -v >&5 ./configure: line 17043: -v: command not found configure:17052: $? = 127 configure:17041: -V >&5 ./configure: line 17043: -V: command not found configure:17052: $? = 127 configure:17041: -qversion >&5 ./configure: line 17043: -qversion: command not found configure:17052: $? = 127 configure:17061: checking whether we are using the GNU Fortran 77 compiler configure:17074: -c conftest.F >&5 ./configure: line 2172: -c: command not found configure:17074: $? = 127 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:17083: result: no configure:17089: checking whether accepts -g configure:17100: -c -g conftest.f >&5 ./configure: line 2172: -c: command not found configure:17100: $? = 127 configure: failed program was: | program main | | end configure:17108: result: no configure:20079: checking for C/C++ restrict keyword configure:20104: gcc -c -fPIC conftest.c >&5 configure:20104: $? = 0 configure:20112: result: __restrict configure:20132: checking whether g++ supports C++11 features by default configure:20426: g++ -c -g -O2 conftest.cpp >&5 conftest.cpp:36:2: error: "This is not a C++11 compiler" #error "This is not a C++11 compiler" ^ 1 error generated. configure:20426: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | | // If the compiler admits that it is not ready for C++11, why torture it? | // Hopefully, this will speed up the test. | | #ifndef __cplusplus | | #error "This is not a C++ compiler" | | #elif __cplusplus < 201103L | | #error "This is not a C++11 compiler" | | #else | | namespace cxx11 | { | | namespace test_static_assert | { | | template | struct check | { | static_assert(sizeof(int) <= sizeof(T), "not big enough"); | }; | | } | | namespace test_final_override | { | | struct Base | { | virtual void f() {} | }; | | struct Derived : public Base | { | virtual void f() override {} | }; | | } | | namespace test_double_right_angle_brackets | { | | template < typename T > | struct check {}; | | typedef check single_type; | typedef check> double_type; | typedef check>> triple_type; | typedef check>>> quadruple_type; | | } | | namespace test_decltype | { | | int | f() | { | int a = 1; | decltype(a) b = 2; | return a + b; | } | | } | | namespace test_type_deduction | { | | template < typename T1, typename T2 > | struct is_same | { | static const bool value = false; | }; | | template < typename T > | struct is_same | { | static const bool value = true; | }; | | template < typename T1, typename T2 > | auto | add(T1 a1, T2 a2) -> decltype(a1 + a2) | { | return a1 + a2; | } | | int | test(const int c, volatile int v) | { | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == false, ""); | auto ac = c; | auto av = v; | auto sumi = ac + av + 'x'; | auto sumf = ac + av + 1.0; | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == true, ""); | static_assert(is_same::value == false, ""); | static_assert(is_same::value == true, ""); | return (sumf > 0.0) ? sumi : add(c, v); | } | | } | | namespace test_noexcept | { | | int f() { return 0; } | int g() noexcept { return 0; } | | static_assert(noexcept(f()) == false, ""); | static_assert(noexcept(g()) == true, ""); | | } | | namespace test_constexpr | { | | template < typename CharT > | unsigned long constexpr | strlen_c_r(const CharT *const s, const unsigned long acc) noexcept | { | return *s ? strlen_c_r(s + 1, acc + 1) : acc; | } | | template < typename CharT > | unsigned long constexpr | strlen_c(const CharT *const s) noexcept | { | return strlen_c_r(s, 0UL); | } | | static_assert(strlen_c("") == 0UL, ""); | static_assert(strlen_c("1") == 1UL, ""); | static_assert(strlen_c("example") == 7UL, ""); | static_assert(strlen_c("another\0example") == 7UL, ""); | | } | | namespace test_rvalue_references | { | | template < int N > | struct answer | { | static constexpr int value = N; | }; | | answer<1> f(int&) { return answer<1>(); } | answer<2> f(const int&) { return answer<2>(); } | answer<3> f(int&&) { return answer<3>(); } | | void | test() | { | int i = 0; | const int c = 0; | static_assert(decltype(f(i))::value == 1, ""); | static_assert(decltype(f(c))::value == 2, ""); | static_assert(decltype(f(0))::value == 3, ""); | } | | } | | namespace test_uniform_initialization | { | | struct test | { | static const int zero {}; | static const int one {1}; | }; | | static_assert(test::zero == 0, ""); | static_assert(test::one == 1, ""); | | } | | namespace test_lambdas | { | | void | test1() | { | auto lambda1 = [](){}; | auto lambda2 = lambda1; | lambda1(); | lambda2(); | } | | int | test2() | { | auto a = [](int i, int j){ return i + j; }(1, 2); | auto b = []() -> int { return '0'; }(); | auto c = [=](){ return a + b; }(); | auto d = [&](){ return c; }(); | auto e = [a, &b](int x) mutable { | const auto identity = [](int y){ return y; }; | for (auto i = 0; i < a; ++i) | a += b--; | return x + identity(a + b); | }(0); | return a + b + c + d + e; | } | | int | test3() | { | const auto nullary = [](){ return 0; }; | const auto unary = [](int x){ return x; }; | using nullary_t = decltype(nullary); | using unary_t = decltype(unary); | const auto higher1st = [](nullary_t f){ return f(); }; | const auto higher2nd = [unary](nullary_t f1){ | return [unary, f1](unary_t f2){ return f2(unary(f1())); }; | }; | return higher1st(nullary) + higher2nd(nullary)(unary); | } | | } | | namespace test_variadic_templates | { | | template | struct sum; | | template | struct sum | { | static constexpr auto value = N0 + sum::value; | }; | | template <> | struct sum<> | { | static constexpr auto value = 0; | }; | | static_assert(sum<>::value == 0, ""); | static_assert(sum<1>::value == 1, ""); | static_assert(sum<23>::value == 23, ""); | static_assert(sum<1, 2>::value == 3, ""); | static_assert(sum<5, 5, 11>::value == 21, ""); | static_assert(sum<2, 3, 5, 7, 11, 13>::value == 41, ""); | | } | | // http://stackoverflow.com/questions/13728184/template-aliases-and-sfinae | // Clang 3.1 fails with headers of libstd++ 4.8.3 when using std::function | // because of this. | namespace test_template_alias_sfinae | { | | struct foo {}; | | template | using member = typename T::member_type; | | template | void func(...) {} | | template | void func(member*) {} | | void test(); | | void test() { func(0); } | | } | | } // namespace cxx11 | | #endif // __cplusplus >= 201103L | | | configure:20433: result: no configure:20443: checking whether g++ supports C++11 features with -std=gnu++11 configure:20739: g++ -std=gnu++11 -c -g -O2 conftest.cpp >&5 configure:20739: $? = 0 configure:20748: result: yes configure:21118: checking for gcc option to support OpenMP configure:21133: gcc -o conftest -fPIC conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' choke me ^ conftest.c:30:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:21133: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -fopenmp conftest.c >&5 clang: error: unsupported option '-fopenmp' clang: error: unsupported option '-fopenmp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -xopenmp conftest.c >&5 clang: error: language not recognized: 'openmp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -openmp conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' choke me ^ conftest.c:30:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -mp conftest.c >&5 clang: error: unknown argument: '-mp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -omp conftest.c >&5 conftest.c:28:2: error: unknown type name 'choke' choke me ^ conftest.c:30:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -qsmp=omp conftest.c >&5 clang: error: unknown argument: '-qsmp=omp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -homp conftest.c >&5 clang: error: unknown argument: '-homp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC -Popenmp conftest.c >&5 clang: error: unknown argument: '-Popenmp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21151: gcc -o conftest -fPIC --openmp conftest.c >&5 clang: error: unsupported option '--openmp' configure:21151: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:21165: result: unsupported configure:21219: checking for ar configure:21246: result: ar configure:21403: checking for ld configure:21430: result: /Library/Developer/CommandLineTools/usr/bin/ld configure:21495: checking for nm configure:21522: result: /usr/bin/nm -B configure:21587: checking for ar configure:21614: result: ar configure:21679: checking for as configure:21695: found /usr/bin/as configure:21706: result: as configure:21771: checking for dlltool configure:21798: result: false configure:21863: checking for objdump configure:21890: result: false configure:21955: checking for strip configure:21982: result: strip configure:22047: checking for ranlib configure:22074: result: ranlib configure:22110: checking for special C compiler options needed for large files configure:22155: result: no configure:22161: checking for _FILE_OFFSET_BITS value needed for large files configure:22186: gcc -c -fPIC conftest.c >&5 configure:22186: $? = 0 configure:22218: result: no configure:22311: checking for stdlib.h configure:22311: result: yes configure:22311: checking for unistd.h configure:22311: result: yes configure:22311: checking for sys/param.h configure:22311: gcc -c -fPIC conftest.c >&5 configure:22311: $? = 0 configure:22311: result: yes configure:22331: checking for getpagesize configure:22331: gcc -o conftest -fPIC conftest.c >&5 configure:22331: $? = 0 configure:22331: result: yes configure:22340: checking for working mmap configure:22487: gcc -o conftest -fPIC conftest.c >&5 configure:22487: $? = 0 configure:22487: ./conftest configure:22487: $? = 0 configure:22497: result: yes configure:22508: checking for malloc in -lmalloc configure:22533: gcc -o conftest -fPIC conftest.c -lmalloc >&5 conftest.c:38:6: warning: incompatible redeclaration of library function 'malloc' [-Wincompatible-library-redeclaration] char malloc (); ^ conftest.c:38:6: note: 'malloc' is a builtin with type 'void *(unsigned long)' 1 warning generated. ld: library not found for -lmalloc clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:22533: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:22542: result: no configure:22555: checking for struct stat.st_blksize configure:22555: gcc -c -fPIC conftest.c >&5 configure:22555: $? = 0 configure:22555: result: yes configure:22569: checking sys/resource.h usability configure:22569: gcc -c -fPIC conftest.c >&5 configure:22569: $? = 0 configure:22569: result: yes configure:22569: checking sys/resource.h presence configure:22569: gcc -E conftest.c configure:22569: $? = 0 configure:22569: result: yes configure:22569: checking for sys/resource.h configure:22569: result: yes configure:22581: checking sys/times.h usability configure:22581: gcc -c -fPIC conftest.c >&5 configure:22581: $? = 0 configure:22581: result: yes configure:22581: checking sys/times.h presence configure:22581: gcc -E conftest.c configure:22581: $? = 0 configure:22581: result: yes configure:22581: checking for sys/times.h configure:22581: result: yes configure:22593: checking malloc.h usability configure:22593: gcc -c -fPIC conftest.c >&5 conftest.c:67:10: fatal error: 'malloc.h' file not found #include ^ 1 error generated. configure:22593: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:22593: result: no configure:22593: checking malloc.h presence configure:22593: gcc -E conftest.c conftest.c:34:10: fatal error: 'malloc.h' file not found #include ^ 1 error generated. configure:22593: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | #include configure:22593: result: no configure:22593: checking for malloc.h configure:22593: result: no configure:22605: checking glob.h usability configure:22605: gcc -c -fPIC conftest.c >&5 configure:22605: $? = 0 configure:22605: result: yes configure:22605: checking glob.h presence configure:22605: gcc -E conftest.c configure:22605: $? = 0 configure:22605: result: yes configure:22605: checking for glob.h configure:22605: result: yes configure:22617: checking fnmatch.h usability configure:22617: gcc -c -fPIC conftest.c >&5 configure:22617: $? = 0 configure:22617: result: yes configure:22617: checking fnmatch.h presence configure:22617: gcc -E conftest.c configure:22617: $? = 0 configure:22617: result: yes configure:22617: checking for fnmatch.h configure:22617: result: yes configure:22629: checking wordexp.h usability configure:22629: gcc -c -fPIC conftest.c >&5 configure:22629: $? = 0 configure:22629: result: yes configure:22629: checking wordexp.h presence configure:22629: gcc -E conftest.c configure:22629: $? = 0 configure:22629: result: yes configure:22629: checking for wordexp.h configure:22629: result: yes configure:22641: checking execinfo.h usability configure:22641: gcc -c -fPIC conftest.c >&5 configure:22641: $? = 0 configure:22641: result: yes configure:22641: checking execinfo.h presence configure:22641: gcc -E conftest.c configure:22641: $? = 0 configure:22641: result: yes configure:22641: checking for execinfo.h configure:22641: result: yes configure:22655: checking for mallinfo configure:22655: gcc -o conftest -fPIC conftest.c >&5 Undefined symbols for architecture x86_64: "_mallinfo", referenced from: _main in conftest-4d4b30.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:22655: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | /* end confdefs.h. */ | /* Define mallinfo to an innocuous variant, in case declares mallinfo. | For example, HP-UX 11i declares gettimeofday. */ | #define mallinfo innocuous_mallinfo | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char mallinfo (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef mallinfo | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char mallinfo (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_mallinfo || defined __stub___mallinfo | choke me | #endif | | int | main () | { | return mallinfo (); | ; | return 0; | } configure:22655: result: no configure:22666: checking for backtrace configure:22666: gcc -o conftest -fPIC conftest.c >&5 configure:22666: $? = 0 configure:22666: result: yes configure:22679: checking for getrlimit configure:22679: gcc -o conftest -fPIC conftest.c >&5 configure:22679: $? = 0 configure:22679: result: yes configure:22690: checking for gethostname configure:22690: gcc -o conftest -fPIC conftest.c >&5 configure:22690: $? = 0 configure:22690: result: yes configure:22765: checking for floor in -lm configure:22790: gcc -o conftest -fPIC conftest.c -lm >&5 conftest.c:51:6: warning: incompatible redeclaration of library function 'floor' [-Wincompatible-library-redeclaration] char floor (); ^ conftest.c:51:6: note: 'floor' is a builtin with type 'double (double)' 1 warning generated. configure:22790: $? = 0 configure:22799: result: yes configure:22812: checking whether isnan is declared configure:22812: gcc -c -fPIC conftest.c >&5 configure:22812: $? = 0 configure:22812: result: yes configure:22827: checking for sqrtl configure:22827: gcc -o conftest -fPIC conftest.c -lm >&5 conftest.c:69:6: warning: incompatible redeclaration of library function 'sqrtl' [-Wincompatible-library-redeclaration] char sqrtl (); ^ conftest.c:69:6: note: 'sqrtl' is a builtin with type 'long double (long double)' 1 warning generated. configure:22827: $? = 0 configure:22827: result: yes configure:22838: checking for feenableexcept configure:22838: gcc -o conftest -fPIC conftest.c -lm >&5 Undefined symbols for architecture x86_64: "_feenableexcept", referenced from: _main in conftest-211bc4.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:22838: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | /* end confdefs.h. */ | /* Define feenableexcept to an innocuous variant, in case declares feenableexcept. | For example, HP-UX 11i declares gettimeofday. */ | #define feenableexcept innocuous_feenableexcept | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char feenableexcept (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef feenableexcept | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char feenableexcept (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_feenableexcept || defined __stub___feenableexcept | choke me | #endif | | int | main () | { | return feenableexcept (); | ; | return 0; | } configure:22838: result: no configure:22848: checking for fenv_t.__control configure:22848: gcc -c -fPIC conftest.c >&5 configure:22848: $? = 0 configure:22848: result: yes configure:22858: checking for fenv_t.__mxcsr configure:22858: gcc -c -fPIC conftest.c >&5 configure:22858: $? = 0 configure:22858: result: yes configure:22881: checking C preprocessor flags for Fortran calling convention cfortran.h configure:22967: result: (probed) configure:23232: checking for DATA support configure:23246: result: configure:23398: checking if compiler needs -Werror to reject unknown flags configure:23414: gcc -c -fPIC -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5 configure:23414: $? = 0 configure:23415: result: yes configure:23435: checking whether pthreads work with -pthread configure:23523: gcc -o conftest -fPIC -pthread -Werror conftest.c -lm >&5 configure:23523: $? = 0 configure:23532: result: yes configure:23551: checking for joinable pthread attribute configure:23566: gcc -o conftest -fPIC -pthread conftest.c -lm >&5 configure:23566: $? = 0 configure:23572: result: PTHREAD_CREATE_JOINABLE configure:23582: checking if more special flags are required for pthreads configure:23597: result: -D_THREAD_SAFE configure:23603: checking for PTHREAD_PRIO_INHERIT configure:23620: gcc -o conftest -fPIC -pthread conftest.c -lm >&5 configure:23620: $? = 0 configure:23629: result: yes configure:23978: checking for szlib library configure:23980: result: suppressed configure:24146: checking hdf5.h usability configure:24146: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:24146: $? = 0 configure:24146: result: yes configure:24146: checking hdf5.h presence configure:24146: gcc -E -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c configure:24146: $? = 0 configure:24146: result: yes configure:24146: checking for hdf5.h configure:24146: result: yes configure:24156: checking for library containing H5Fopen configure:24187: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lm >&5 Undefined symbols for architecture x86_64: "_H5Fopen", referenced from: _main in conftest-806951.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:24187: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:24187: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lhdf5 -lm >&5 configure:24187: $? = 0 configure:24204: result: -lhdf5 configure:24216: checking for library containing H5DSis_scale configure:24247: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5DSis_scale", referenced from: _main in conftest-1009d5.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:24247: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:24247: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lhdf5_hl -lhdf5 -lm >&5 configure:24247: $? = 0 configure:24264: result: -lhdf5_hl configure:24491: checking netcdf.h usability configure:24491: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:24491: $? = 0 configure:24491: result: yes configure:24491: checking netcdf.h presence configure:24491: gcc -E -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c configure:24491: $? = 0 configure:24491: result: yes configure:24491: checking for netcdf.h configure:24491: result: yes configure:24501: checking for library containing nc_open configure:24532: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_nc_open", referenced from: _main in conftest-f820de.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:24532: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:24532: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:24532: $? = 0 configure:24549: result: -lnetcdf configure:24564: checking nc-config script configure:24568: checking for nc-config configure:24584: found /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/bin/nc-config configure:24595: result: /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/bin/nc-config configure:24604: checking netcdf's OpenDAP support configure:24610: result: yes configure:24616: checking netcdf's nc2 support configure:24623: result: yes configure:24629: checking netcdf's nc4 support configure:24636: result: yes configure:24642: checking netcdf's nc4/hdf5 support configure:24649: result: yes configure:24675: checking for library containing H5TS_mutex_lock configure:24706: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5TS_mutex_lock", referenced from: _main in conftest-34996d.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:24706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:24706: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lnetcdf -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5TS_mutex_lock", referenced from: _main in conftest-0ecfe7.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:24706: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:24723: result: no configure:24930: checking for the UDUNITS2 library configure:24932: result: suppressed configure:25078: checking for uuid/uuid.h extra include path configure:25098: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:25098: $? = 0 configure:25125: result: (none required) configure:25153: checking for library containing uuid_generate configure:25186: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:25186: $? = 0 configure:25214: result: configure:25250: checking uuid/uuid.h usability configure:25250: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:25250: $? = 0 configure:25250: result: yes configure:25250: checking uuid/uuid.h presence configure:25250: gcc -E -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c configure:25250: $? = 0 configure:25250: result: yes configure:25250: checking for uuid/uuid.h configure:25250: result: yes configure:25255: checking whether uuid_generate is declared configure:25255: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:25255: $? = 0 configure:25255: result: yes configure:25972: checking for the CMOR library configure:25974: result: suppressed configure:26154: checking for the ECCODES library configure:26156: result: suppressed configure:26258: checking grib_api.h usability configure:26258: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:26258: $? = 0 configure:26258: result: yes configure:26258: checking grib_api.h presence configure:26258: gcc -E -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c configure:26258: $? = 0 configure:26258: result: yes configure:26258: checking for grib_api.h configure:26258: result: yes configure:26268: checking for library containing grib_get_message configure:26299: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_grib_get_message", referenced from: _main in conftest-a3667a.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:26299: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_DECL_UUID_GENERATE 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:26299: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:26299: $? = 0 configure:26316: result: -lgrib_api configure:26349: checking for GRIB support configure:26366: result: yes configure:26372: checking for CGRIBEX support configure:26389: result: yes configure:26395: checking for SERVICE support configure:26412: result: yes configure:26418: checking for EXTRA support configure:26435: result: yes configure:26441: checking for IEG support configure:26458: result: yes configure:26464: checking for FFTW3 support configure:26646: checking proj_api.h usability configure:26646: gcc -c -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:26646: $? = 0 configure:26646: result: yes configure:26646: checking proj_api.h presence configure:26646: gcc -E -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c configure:26646: $? = 0 configure:26646: result: yes configure:26646: checking for proj_api.h configure:26646: result: yes configure:26656: checking for library containing pj_init configure:26687: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_pj_init", referenced from: _main in conftest-77afe6.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:26687: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.9.5rc1" | #define PACKAGE_STRING "cdo 1.9.5rc1" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.9.5rc1" | #define PACKAGE "cdo" | #define VERSION "1.9.5rc1" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_CXX11 1 | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" | #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_UUID_UUID_H 1 | #define HAVE_DECL_UUID_GENERATE 1 | #define HAVE_GRIB_API_H 1 | #define HAVE_LIBGRIB_API 1 | #define HAVE_LIBGRIB 1 | #define HAVE_LIBCGRIBEX 1 | #define HAVE_LIBSERVICE 1 | #define HAVE_LIBEXTRA 1 | #define HAVE_LIBIEG 1 | #define HAVE_PROJ_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pj_init (); | int | main () | { | return pj_init (); | ; | return 0; | } configure:26687: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lproj -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:26687: $? = 0 configure:26704: result: -lproj configure:26909: checking for the CURL library configure:26911: result: suppressed configure:27091: checking for MAGICS library configure:27093: result: suppressed configure:27296: checking for XML2 library configure:27298: result: suppressed configure:27317: checking for build a separate CDI library and link CDO to it configure:27334: result: no configure:27358: checking for building an additional static CDO binary configure:27371: result: no configure:27383: checking for HIRLAM extensions configure:27399: result: no configure:27453: checking for pthread_join in LIBS= with CFLAGS=-D_THREAD_SAFE -pthread configure:27473: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lproj -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:27473: $? = 0 configure:27478: result: yes configure:27543: checking if compiler needs -Werror to reject unknown flags configure:27559: gcc -c -fPIC -D_THREAD_SAFE -pthread -Werror -Wunknown-warning-option -Wsizeof-array-argument -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:27559: $? = 0 configure:27560: result: yes configure:27696: checking for joinable pthread attribute configure:27711: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lproj -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:27711: $? = 0 configure:27717: result: PTHREAD_CREATE_JOINABLE configure:27727: checking if more special flags are required for pthreads configure:27742: result: -D_THREAD_SAFE configure:27748: checking for PTHREAD_PRIO_INHERIT configure:27774: result: yes configure:28119: checking for szlib library configure:28121: result: suppressed configure:28319: checking for netcdf.h configure:28319: result: yes configure:28329: checking for library containing nc_open configure:28377: result: -lnetcdf configure:28392: checking nc-config script configure:28396: checking for nc-config configure:28423: result: /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/bin/nc-config configure:28432: checking netcdf's OpenDAP support configure:28438: result: yes configure:28444: checking netcdf's nc2 support configure:28451: result: yes configure:28457: checking netcdf's nc4 support configure:28464: result: yes configure:28470: checking netcdf's nc4/hdf5 support configure:28477: result: yes configure:28503: checking for library containing H5TS_mutex_lock configure:28551: result: no configure:28564: checking for library containing H5get_libversion configure:28595: gcc -o conftest -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib conftest.c -lnetcdf -lproj -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:28595: $? = 0 configure:28612: result: none required configure:28803: checking for the ECCODES library configure:28805: result: suppressed configure:28905: checking for grib_api.h configure:28905: result: yes configure:28915: checking for library containing grib_get_message configure:28963: result: -lgrib_api configure:29002: checking for GRIB support configure:29019: result: yes configure:29025: checking for CGRIBEX support configure:29042: result: yes configure:29048: checking for SERVICE support configure:29065: result: yes configure:29071: checking for EXTRA support configure:29088: result: yes configure:29094: checking for IEG support configure:29111: result: yes configure:29143: checking for building an additional static CDI binary configure:29156: result: no configure:29168: checking for HIRLAM extensions configure:29184: result: no configure:29202: checking if x86/amd64 assembler speaks SSE4.2 configure:29225: gcc -c -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:29225: $? = 0 configure:29228: result: yes configure:29253: checking if x86/amd64 assembler speaks AVX configure:29274: gcc -c -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:29274: $? = 0 configure:29277: result: yes configure:29302: checking if x86/amd64 assembler speaks AVX2 configure:29323: gcc -c -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include conftest.c >&5 configure:29323: $? = 0 configure:29326: result: yes configure:29382: checking for gawk configure:29409: result: awk configure:29554: checking that generated files are newer than configure configure:29560: result: done configure:29639: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.9.5rc1, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on MacBook-Pro-2.iiasa.ac.at config.status:1415: creating test/File.test config.status:1415: creating test/Read_grib.test config.status:1415: creating test/Read_netcdf.test config.status:1415: creating test/Copy_netcdf.test config.status:1415: creating test/Comp.test config.status:1415: creating test/Compc.test config.status:1415: creating test/Cat.test config.status:1415: creating test/Gridarea.test config.status:1415: creating test/Genweights.test config.status:1415: creating test/Remap.test config.status:1415: creating test/Remap2.test config.status:1415: creating test/Remap3.test config.status:1415: creating test/Remapeta.test config.status:1415: creating test/EOF.test config.status:1415: creating test/Select.test config.status:1415: creating test/Spectral.test config.status:1415: creating test/Vertint.test config.status:1415: creating test/Timstat.test config.status:1415: creating test/Timstat2.test config.status:1415: creating test/Timselstat.test config.status:1415: creating test/Seasstat.test config.status:1415: creating test/Timpctl.test config.status:1415: creating test/Runstat.test config.status:1415: creating test/Runpctl.test config.status:1415: creating test/Multiyearstat.test config.status:1415: creating test/Ydrunstat.test config.status:1415: creating test/Gridboxstat.test config.status:1415: creating test/Vertstat.test config.status:1415: creating test/Fldstat.test config.status:1415: creating test/Fldpctl.test config.status:1415: creating test/Ensstat.test config.status:1415: creating test/Enspctl.test config.status:1415: creating test/Merstat.test config.status:1415: creating test/Zonstat.test config.status:1415: creating test/Mergetime.test config.status:1415: creating test/Afterburner.test config.status:1415: creating test/Detrend.test config.status:1415: creating test/Arithc.test config.status:1415: creating test/Arith.test config.status:1415: creating test/Ymonarith.test config.status:1415: creating test/Expr.test config.status:1415: creating test/Gradsdes.test config.status:1415: creating test/Collgrid.test config.status:1415: creating test/threads.test config.status:1415: creating test/tsformat.test config.status:1415: creating test/wildcard.test config.status:1415: creating test/Setmiss.test config.status:1415: creating test/Smooth.test config.status:1415: creating test/MapReduce.test config.status:1415: creating test/Ninfo.test config.status:1415: creating test/Filter.test config.status:1415: creating Makefile config.status:1415: creating src/lib/ncl/Makefile config.status:1415: creating src/lib/yac/Makefile config.status:1415: creating src/Makefile config.status:1415: creating contrib/Makefile config.status:1415: creating test/Makefile config.status:1415: creating test/data/Makefile config.status:1415: creating test/bandit_tests/Makefile config.status:1415: creating cdo.spec config.status:1415: creating cdo.settings config.status:1415: creating src/config.h config.status:1596: src/config.h is unchanged config.status:1644: executing depfiles commands config.status:1644: executing libtool commands configure:32463: === configuring in libcdi (/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/libcdi) configure:32526: running /bin/sh ./configure --disable-option-checking '--prefix=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' 'CFLAGS=-fPIC' '-with-netcdf=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' '-with-jasper=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' '-with-hdf5=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' '-with-grib_api=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' '-with-proj=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' --cache-file=/dev/null --srcdir=. configure:32545: CDO is configured with the following options: configure:32564: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-apple-darwin15.6.0 ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=-fPIC ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_DCE_UUID_C_INCLUDE_set= ac_cv_env_DCE_UUID_C_INCLUDE_value= ac_cv_env_DCE_UUID_C_LIB_set= ac_cv_env_DCE_UUID_C_LIB_value= ac_cv_env_F77_set= ac_cv_env_F77_value= ac_cv_env_FFLAGS_set= ac_cv_env_FFLAGS_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_LT_SYS_LIBRARY_PATH_set= ac_cv_env_LT_SYS_LIBRARY_PATH_value= ac_cv_env_OSSP_UUID_C_INCLUDE_set= ac_cv_env_OSSP_UUID_C_INCLUDE_value= ac_cv_env_OSSP_UUID_C_LIB_set= ac_cv_env_OSSP_UUID_C_LIB_value= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_set= ac_cv_env_UTIL_LINUX_UUID_C_INCLUDE_value= ac_cv_env_UTIL_LINUX_UUID_C_LIB_set= ac_cv_env_UTIL_LINUX_UUID_C_LIB_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_f77_compiler_gnu=no ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=no ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=no ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_have_decl_uuid_generate=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=no ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_proj_api_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_uuid_uuid_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-apple-darwin15.6.0 ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_fenv_t___control=yes ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/usr/bin/install -c' ac_cv_path_lt_DD=/bin/dd ac_cv_prog_AWK=awk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_DSYMUTIL=dsymutil ac_cv_prog_ac_ct_LD=/Library/Developer/CommandLineTools/usr/bin/ld ac_cv_prog_ac_ct_LIPO=lipo ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_NMEDIT=nmedit ac_cv_prog_ac_ct_OBJDUMP=false ac_cv_prog_ac_ct_OTOOL=otool ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=unsupported ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_f77_g=no ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_H5get_libversion='none required' ac_cv_search_grib_get_message=-lgrib_api ac_cv_search_nc_open=-lnetcdf ac_cv_search_pj_init=-lproj ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no acx_cv_c_include_uuid_uuid_h= acx_cv_cf_flag=' (probed)' acx_cv_option_search_uuid_generate_c=' ' am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=yes ax_cv_cxx_compile_cxx11=no ax_cv_cxx_compile_cxx11__std_gnupp11=yes lt_cv_apple_cc_single_mod=yes lt_cv_ar_at_file=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_exported_symbols_list=yes lt_cv_ld_force_load=yes lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/Library/Developer/CommandLineTools/usr/bin/ld lt_cv_path_LDCXX=/Library/Developer/CommandLineTools/usr/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fno-common -DPIC' lt_cv_prog_compiler_pic_CXX='-fno-common -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST][BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_global_symbol_to_import= lt_cv_sys_max_cmd_len=196608 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop lt_cv_truncate_bin='/bin/dd bs=4096 count=1' ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/config/missing aclocal-1.15' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/config/missing autoconf' AUTOHEADER='${SHELL} /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/config/missing autoheader' AUTOMAKE='${SHELL} /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/config/missing automake-1.15' AWK='awk' BASH='/bin/sh' BUILD_AVX2_TESTS_FALSE='#' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include ' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++ -std=gnu++11' CXXCPP='g++ -E -std=gnu++11' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2 -D_THREAD_SAFE -pthread' CYGPATH_W='echo' DCE_UUIDROOT='' DCE_UUID_C_INCLUDE='' DCE_UUID_C_LIB='' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='dsymutil' DUMPBIN='' ECCODES_INCLUDE='' ECCODES_LIBS='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_DATA='true' ENABLE_EXTRA='yes' ENABLE_FORTRAN='true' ENABLE_GRIB='yes' ENABLE_GRIBAPI='yes' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='#' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' ENABLE_THREADS='yes' EXEEXT='' F77='' FFLAGS='' FGREP='/usr/bin/grep -F' FORTRAN_WORKS='yes' GREP='/usr/bin/grep' GRIB_API_INCLUDE=' -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include' GRIB_API_LIBS=' -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -lgrib_api' HAVE_CXX11='1' HAVE_LIBGRIB_API_FALSE='#' HAVE_LIBGRIB_API_TRUE='' HDF5_INCLUDE=' -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include' HDF5_LIBS=' -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -lhdf5' HDF5_ROOT='/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/Library/Developer/CommandLineTools/usr/bin/ld' LDFLAGS='-L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib ' LIBOBJS='' LIBS='-lgrib_api -lnetcdf -lproj -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='lipo' LN_S='ln -s' LTLIBOBJS='' LT_SYS_LIBRARY_PATH='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='config/install-sh -c -d' NC_CONFIG='/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/bin/nc-config' NETCDF_INCLUDE=' -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include' NETCDF_LIBS=' -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -lnetcdf' NETCDF_ROOT='/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' NM='/usr/bin/nm -B' NMEDIT='nmedit' OBJDUMP='false' OBJEXT='o' OPENMP_CFLAGS='' OSSP_UUIDROOT='' OSSP_UUID_C_INCLUDE='' OSSP_UUID_C_LIB='' OTOOL64=':' OTOOL='otool' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.9.5rc1' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.9.5rc1' PATH_SEPARATOR=':' PROJ_INCLUDE=' -I/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/include' PROJ_LDFLAGS=' -L/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz/lib -lproj' PTHREAD_CC='gcc' PTHREAD_CFLAGS='-D_THREAD_SAFE -D_THREAD_SAFE -pthread' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-apple-darwin15.6.0' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USE_F77_FALSE='' USE_F77_TRUE='#' UTIL_LINUX_UUIDROOT='' UTIL_LINUX_UUID_C_INCLUDE='' UTIL_LINUX_UUID_C_LIB='' UUID_C_INCLUDE='' UUID_C_LIB='' VERSION='1.9.5rc1' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' ac_ct_F77='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-apple-darwin15.6.0' build_alias='' build_cpu='x86_64' build_os='darwin15.6.0' build_vendor='apple' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-apple-darwin15.6.0' host_alias='' host_cpu='x86_64' host_os='darwin15.6.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/edoardobeltrame/Desktop/paper3/cdoStuff/cdo-1.9.5rc1/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/Users/edoardobeltrame/Desktop/paper3/cdoStuff/cartellaPerConfiguraz' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.9.5rc1" #define PACKAGE_STRING "cdo 1.9.5rc1" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.9.5rc1" #define PACKAGE "cdo" #define VERSION "1.9.5rc1" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_CXX11 1 #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define CXX_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" #define C_VERSION "Apple LLVM version 8.0.0 (clang-800.0.42.1)" #define SYSTEM_TYPE "x86_64-apple-darwin15.6.0" #define HAVE_LIBM 1 #define HAVE_DECL_ISNAN 1 #define HAVE_SQRTL 1 #define HAVE_FENV_T___CONTROL 1 #define HAVE_FENV_T___MXCSR 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 #define HAVE_UUID_UUID_H 1 #define HAVE_DECL_UUID_GENERATE 1 #define HAVE_GRIB_API_H 1 #define HAVE_LIBGRIB_API 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define HAVE_PROJ_API_H 1 #define HAVE_LIBPROJ 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 #define HAVE_H5GET_LIBVERSION 1 #define HAVE_GRIB_API_H 1 #define HAVE_LIBGRIB_API 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define C_COMPILER "gcc -fPIC -D_THREAD_SAFE -pthread -D_THREAD_SAFE -D_THREAD_SAFE -pthread" #define CXX_COMPILER "g++ -std=gnu++11 -g -O2 -D_THREAD_SAFE -pthread" #define F77_COMPILER " " configure: exit 0