This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.8.1rc2, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-netcdf=/usr/local/Cellar/netcdf/4.4.1.1_4 --with-hdf5=/usr/local/Cellar/hdf5/1.10.0-patch1 ## --------- ## ## Platform. ## ## --------- ## hostname = Sanitas-MacBook-Pro.local uname -m = x86_64 uname -r = 13.4.0 uname -s = Darwin uname -v = Darwin Kernel Version 13.4.0: Mon Jan 11 18:17:34 PST 2016; root:xnu-2422.115.15~1/RELEASE_X86_64 /usr/bin/uname -p = i386 /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = Mach kernel version: Darwin Kernel Version 13.4.0: Mon Jan 11 18:17:34 PST 2016; root:xnu-2422.115.15~1/RELEASE_X86_64 Kernel configured for up to 2 processors. 2 processors are physically available. 2 processors are logically available. Processor type: i486 (Intel 80486) Processors active: 0 1 Primary memory available: 8.00 gigabytes Default processor set: 200 tasks, 931 threads, 2 processors Load average: 1.59, Mach factor: 0.70 /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /Library/Frameworks/Python.framework/Versions/2.7/bin PATH: /usr/bin PATH: /bin PATH: /usr/sbin PATH: /sbin PATH: /usr/local/bin PATH: /usr/texbin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2608: checking build system type configure:2622: result: x86_64-apple-darwin13.4.0 configure:2642: checking host system type configure:2655: result: x86_64-apple-darwin13.4.0 configure:2694: checking for a BSD-compatible install configure:2762: result: /usr/bin/install -c configure:2773: checking whether build environment is sane configure:2828: result: yes configure:2979: checking for a thread-safe mkdir -p configure:3018: result: config/install-sh -c -d configure:3025: checking for gawk configure:3055: result: no configure:3025: checking for mawk configure:3055: result: no configure:3025: checking for nawk configure:3055: result: no configure:3025: checking for awk configure:3041: found /usr/bin/awk configure:3052: result: awk configure:3063: checking whether make sets $(MAKE) configure:3085: result: yes configure:3114: checking whether make supports nested variables configure:3131: result: yes configure:3259: checking whether to enable maintainer-specific portions of Makefiles configure:3268: result: no configure:3295: checking for style of include used by make configure:3323: result: GNU configure:3394: checking for gcc configure:3410: found /usr/bin/gcc configure:3421: result: gcc configure:3650: checking for C compiler version configure:3659: gcc --version >&5 Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) Target: x86_64-apple-darwin13.4.0 Thread model: posix Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 configure:3670: $? = 0 configure:3659: gcc -v >&5 Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) Target: x86_64-apple-darwin13.4.0 Thread model: posix configure:3670: $? = 0 configure:3659: gcc -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:3670: $? = 1 configure:3659: gcc -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:3670: $? = 1 configure:3690: checking whether the C compiler works configure:3712: gcc conftest.c >&5 configure:3716: $? = 0 configure:3764: result: yes configure:3767: checking for C compiler default output file name configure:3769: result: a.out configure:3775: checking for suffix of executables configure:3782: gcc -o conftest conftest.c >&5 configure:3786: $? = 0 configure:3808: result: configure:3830: checking whether we are cross compiling configure:3838: gcc -o conftest conftest.c >&5 configure:3842: $? = 0 configure:3849: ./conftest configure:3853: $? = 0 configure:3868: result: no configure:3873: checking for suffix of object files configure:3895: gcc -c conftest.c >&5 configure:3899: $? = 0 configure:3920: result: o configure:3924: checking whether we are using the GNU C compiler configure:3943: gcc -c conftest.c >&5 configure:3943: $? = 0 configure:3952: result: yes configure:3961: checking whether gcc accepts -g configure:3981: gcc -c -g conftest.c >&5 configure:3981: $? = 0 configure:4022: result: yes configure:4039: checking for gcc option to accept ISO C89 configure:4103: gcc -c -g -O2 conftest.c >&5 configure:4103: $? = 0 configure:4116: result: none needed configure:4141: checking whether gcc understands -c and -o together configure:4163: gcc -c conftest.c -o conftest2.o configure:4166: $? = 0 configure:4163: gcc -c conftest.c -o conftest2.o configure:4166: $? = 0 configure:4178: result: yes configure:4197: checking dependency style of gcc configure:4308: result: gcc3 configure:4373: checking for ar configure:4389: found /usr/bin/ar configure:4400: result: ar configure:4426: checking the archiver (ar) interface configure:4442: gcc -c -g -O2 conftest.c >&5 configure:4442: $? = 0 configure:4444: ar cru libconftest.a conftest.o >&5 configure:4447: $? = 0 configure:4475: result: ar configure:4496: setting up libtool configure:4544: checking how to print strings configure:4571: result: printf configure:4592: checking for a sed that does not truncate output configure:4656: result: /usr/bin/sed configure:4674: checking for grep that handles long lines and -e configure:4732: result: /usr/bin/grep configure:4737: checking for egrep configure:4799: result: /usr/bin/grep -E configure:4804: checking for fgrep configure:4866: result: /usr/bin/grep -F configure:4901: checking for ld used by gcc configure:4968: result: /Library/Developer/CommandLineTools/usr/bin/ld configure:4975: checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld configure:4990: result: no configure:5002: checking for BSD- or MS-compatible name lister (nm) configure:5051: result: /usr/bin/nm configure:5181: checking the name lister (/usr/bin/nm) interface configure:5188: gcc -c -g -O2 conftest.c >&5 configure:5191: /usr/bin/nm "conftest.o" configure:5194: output 0000000000000224 S _some_variable configure:5201: result: BSD nm configure:5204: checking whether ln -s works configure:5208: result: yes configure:5216: checking the maximum length of command line arguments configure:5346: result: 196608 configure:5363: checking whether the shell understands some XSI constructs configure:5373: result: yes configure:5377: checking whether the shell understands "+=" configure:5383: result: yes configure:5418: checking how to convert x86_64-apple-darwin13.4.0 file names to x86_64-apple-darwin13.4.0 format configure:5458: result: func_convert_file_noop configure:5465: checking how to convert x86_64-apple-darwin13.4.0 file names to toolchain format configure:5485: result: func_convert_file_noop configure:5492: checking for /Library/Developer/CommandLineTools/usr/bin/ld option to reload object files configure:5499: result: -r configure:5573: checking for objdump configure:5603: result: no configure:5632: checking how to recognize dependent libraries configure:5834: result: pass_all configure:5919: checking for dlltool configure:5949: result: no configure:5979: checking how to associate runtime and link libraries configure:6006: result: printf %s\n configure:6130: checking for archiver @FILE support configure:6147: gcc -c -g -O2 conftest.c >&5 configure:6147: $? = 0 configure:6150: ar cru libconftest.a @conftest.lst >&5 ar: @conftest.lst: No such file or directory configure:6153: $? = 1 configure:6173: result: no configure:6231: checking for strip configure:6247: found /usr/bin/strip configure:6258: result: strip configure:6330: checking for ranlib configure:6346: found /usr/bin/ranlib configure:6357: result: ranlib configure:6459: checking command to parse /usr/bin/nm output from gcc object configure:6579: gcc -c -g -O2 conftest.c >&5 configure:6582: $? = 0 configure:6586: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6589: $? = 0 cannot find nm_test_var in conftest.nm configure:6579: gcc -c -g -O2 conftest.c >&5 configure:6582: $? = 0 configure:6586: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6589: $? = 0 configure:6655: gcc -o conftest -g -O2 conftest.c conftstm.o >&5 configure:6658: $? = 0 configure:6696: result: ok configure:6733: checking for sysroot configure:6763: result: no configure:7019: checking for mt configure:7049: result: no configure:7069: checking if : is a manifest tool configure:7075: : '-?' configure:7083: result: no configure:7139: checking for dsymutil configure:7155: found /usr/bin/dsymutil configure:7166: result: dsymutil configure:7231: checking for nmedit configure:7247: found /usr/bin/nmedit configure:7258: result: nmedit configure:7323: checking for lipo configure:7339: found /usr/bin/lipo configure:7350: result: lipo configure:7415: checking for otool configure:7431: found /usr/bin/otool configure:7442: result: otool configure:7507: checking for otool64 configure:7537: result: no configure:7582: checking for -single_module linker flag gcc -g -O2 -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c configure:7615: result: yes configure:7618: checking for -exported_symbols_list linker flag configure:7638: gcc -o conftest -g -O2 -Wl,-exported_symbols_list,conftest.sym conftest.c >&5 configure:7638: $? = 0 configure:7648: result: yes configure:7651: checking for -force_load linker flag gcc -g -O2 -c -o conftest.o conftest.c ar cru libconftest.a conftest.o ranlib libconftest.a gcc -g -O2 -o conftest conftest.c -Wl,-force_load,./libconftest.a configure:7683: result: yes configure:7725: checking how to run the C preprocessor configure:7756: gcc -E conftest.c configure:7756: $? = 0 configure:7770: gcc -E conftest.c conftest.c:12:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:7770: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | /* end confdefs.h. */ | #include configure:7795: result: gcc -E configure:7815: gcc -E conftest.c configure:7815: $? = 0 configure:7829: gcc -E conftest.c conftest.c:12:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:7829: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | /* end confdefs.h. */ | #include configure:7858: checking for ANSI C header files configure:7878: gcc -c -g -O2 conftest.c >&5 configure:7878: $? = 0 configure:7951: gcc -o conftest -g -O2 conftest.c >&5 configure:7951: $? = 0 configure:7951: ./conftest configure:7951: $? = 0 configure:7962: result: yes configure:7975: checking for sys/types.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for sys/stat.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for stdlib.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for string.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for memory.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for strings.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for inttypes.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for stdint.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7975: checking for unistd.h configure:7975: gcc -c -g -O2 conftest.c >&5 configure:7975: $? = 0 configure:7975: result: yes configure:7989: checking for dlfcn.h configure:7989: gcc -c -g -O2 conftest.c >&5 configure:7989: $? = 0 configure:7989: result: yes configure:8195: checking for objdir configure:8210: result: .libs configure:8481: checking if gcc supports -fno-rtti -fno-exceptions configure:8499: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 configure:8503: $? = 0 configure:8516: result: yes configure:8843: checking for gcc option to produce PIC configure:8850: result: -fno-common -DPIC configure:8858: checking if gcc PIC flag -fno-common -DPIC works configure:8876: gcc -c -g -O2 -fno-common -DPIC -DPIC conftest.c >&5 configure:8880: $? = 0 configure:8893: result: yes configure:8922: checking if gcc static flag -static works configure:8950: result: no configure:8965: checking if gcc supports -c -o file.o configure:8986: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:8990: $? = 0 configure:9012: result: yes configure:9020: checking if gcc supports -c -o file.o configure:9067: result: yes configure:9100: checking whether the gcc linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries configure:10253: result: yes configure:10493: checking dynamic linker characteristics configure:11226: result: darwin13.4.0 dyld configure:11333: checking how to hardcode library paths into programs configure:11358: result: immediate configure:11898: checking whether stripping libraries is possible configure:11912: result: yes configure:11938: checking if libtool supports shared libraries configure:11940: result: yes configure:11943: checking whether to build shared libraries configure:11964: result: yes configure:11967: checking whether to build static libraries configure:11971: result: yes configure:12056: checking for bash configure:12086: result: /bin/sh configure:12153: checking for gcc configure:12180: result: gcc configure:12245: checking for g++ configure:12261: found /usr/bin/g++ configure:12272: result: g++ configure:12294: checking for gcc option to accept ISO C99 configure:12443: gcc -c -g -O2 conftest.c >&5 configure:12443: $? = 0 configure:12456: result: none needed configure:12472: checking for C/C++ restrict keyword configure:12497: gcc -c -g -O2 conftest.c >&5 configure:12497: $? = 0 configure:12505: result: __restrict configure:12526: checking for gcc option to support OpenMP configure:12541: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:27:2: error: unknown type name 'choke' choke me ^ conftest.c:29:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:12541: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12558: gcc -o conftest -g -O2 -fopenmp conftest.c >&5 conftest.c:27:2: error: unknown type name 'choke' choke me ^ conftest.c:29:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:12558: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12558: gcc -o conftest -g -O2 -xopenmp conftest.c >&5 clang: error: language not recognized: 'openmp' configure:12558: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12558: gcc -o conftest -g -O2 -openmp conftest.c >&5 conftest.c:27:2: error: unknown type name 'choke' choke me ^ conftest.c:29:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:12558: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12558: gcc -o conftest -g -O2 -mp conftest.c >&5 clang: error: unknown argument: '-mp' configure:12558: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12558: gcc -o conftest -g -O2 -omp conftest.c >&5 conftest.c:27:2: error: unknown type name 'choke' choke me ^ conftest.c:29:10: fatal error: 'omp.h' file not found #include ^ 2 errors generated. configure:12558: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12558: gcc -o conftest -g -O2 -qsmp=omp conftest.c >&5 clang: error: unknown argument: '-qsmp=omp' configure:12558: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12572: result: unsupported configure:12626: checking for ar configure:12653: result: ar configure:12810: checking for ld configure:12837: result: /Library/Developer/CommandLineTools/usr/bin/ld configure:12902: checking for nm configure:12929: result: /usr/bin/nm configure:12994: checking for ar configure:13021: result: ar configure:13086: checking for as configure:13102: found /usr/bin/as configure:13113: result: as configure:13178: checking for dlltool configure:13205: result: false configure:13270: checking for objdump configure:13297: result: false configure:13362: checking for strip configure:13389: result: strip configure:13454: checking for ranlib configure:13481: result: ranlib configure:13616: checking for C++ compiler version configure:13625: g++ --version >&5 Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) Target: x86_64-apple-darwin13.4.0 Thread model: posix Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 configure:13636: $? = 0 configure:13625: g++ -v >&5 Configured with: --prefix=/Library/Developer/CommandLineTools/usr --with-gxx-include-dir=/usr/include/c++/4.2.1 Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn) Target: x86_64-apple-darwin13.4.0 Thread model: posix configure:13636: $? = 0 configure:13625: g++ -V >&5 clang: error: argument to '-V' is missing (expected 1 value) clang: error: no input files configure:13636: $? = 1 configure:13625: g++ -qversion >&5 clang: error: unknown argument: '-qversion' clang: error: no input files configure:13636: $? = 1 configure:13640: checking whether we are using the GNU C++ compiler configure:13659: g++ -c conftest.cpp >&5 configure:13659: $? = 0 configure:13668: result: yes configure:13677: checking whether g++ accepts -g configure:13697: g++ -c -g conftest.cpp >&5 configure:13697: $? = 0 configure:13738: result: yes configure:13763: checking dependency style of g++ configure:13874: result: gcc3 configure:13907: checking how to run the C++ preprocessor configure:13934: g++ -E conftest.cpp configure:13934: $? = 0 configure:13948: g++ -E conftest.cpp conftest.cpp:25:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:13948: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:13973: result: g++ -E configure:13993: g++ -E conftest.cpp configure:13993: $? = 0 configure:14007: g++ -E conftest.cpp conftest.cpp:25:10: fatal error: 'ac_nonexistent.h' file not found #include ^ 1 error generated. configure:14007: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:14176: checking for ld used by g++ configure:14243: result: /Library/Developer/CommandLineTools/usr/bin/ld configure:14250: checking if the linker (/Library/Developer/CommandLineTools/usr/bin/ld) is GNU ld configure:14265: result: no configure:14320: checking whether the g++ linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries configure:15325: result: yes configure:15361: g++ -c -g -O2 conftest.cpp >&5 configure:15364: $? = 0 configure:15884: checking for g++ option to produce PIC configure:15891: result: -fno-common -DPIC configure:15899: checking if g++ PIC flag -fno-common -DPIC works configure:15917: g++ -c -g -O2 -fno-common -DPIC -DPIC conftest.cpp >&5 configure:15921: $? = 0 configure:15934: result: yes configure:15957: checking if g++ static flag -static works configure:15985: result: no configure:15997: checking if g++ supports -c -o file.o configure:16018: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:16022: $? = 0 configure:16044: result: yes configure:16049: checking if g++ supports -c -o file.o configure:16096: result: yes configure:16126: checking whether the g++ linker (/Library/Developer/CommandLineTools/usr/bin/ld) supports shared libraries configure:16162: result: yes configure:16303: checking dynamic linker characteristics configure:16970: result: darwin13.4.0 dyld configure:17023: checking how to hardcode library paths into programs configure:17048: result: immediate configure:17100: checking for special C compiler options needed for large files configure:17145: result: no configure:17151: checking for _FILE_OFFSET_BITS value needed for large files configure:17176: gcc -c -g -O2 conftest.c >&5 configure:17176: $? = 0 configure:17208: result: no configure:17299: checking for stdlib.h configure:17299: result: yes configure:17299: checking for unistd.h configure:17299: result: yes configure:17299: checking for sys/param.h configure:17299: gcc -c -g -O2 conftest.c >&5 configure:17299: $? = 0 configure:17299: result: yes configure:17319: checking for getpagesize configure:17319: gcc -o conftest -g -O2 conftest.c >&5 configure:17319: $? = 0 configure:17319: result: yes configure:17328: checking for working mmap configure:17475: gcc -o conftest -g -O2 conftest.c >&5 configure:17475: $? = 0 configure:17475: ./conftest configure:17475: $? = 0 configure:17485: result: yes configure:17496: checking for malloc in -lmalloc configure:17521: gcc -o conftest -g -O2 conftest.c -lmalloc >&5 conftest.c:37:6: warning: incompatible redeclaration of library function 'malloc' [-Wincompatible-library-redeclaration] char malloc (); ^ conftest.c:37:6: note: 'malloc' is a builtin with type 'void *(unsigned long)' 1 warning generated. ld: library not found for -lmalloc clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:17521: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:17530: result: no configure:17543: checking for struct stat.st_blksize configure:17543: gcc -c -g -O2 conftest.c >&5 configure:17543: $? = 0 configure:17543: result: yes configure:17557: checking sys/resource.h usability configure:17557: gcc -c -g -O2 conftest.c >&5 configure:17557: $? = 0 configure:17557: result: yes configure:17557: checking sys/resource.h presence configure:17557: gcc -E conftest.c configure:17557: $? = 0 configure:17557: result: yes configure:17557: checking for sys/resource.h configure:17557: result: yes configure:17569: checking sys/times.h usability configure:17569: gcc -c -g -O2 conftest.c >&5 configure:17569: $? = 0 configure:17569: result: yes configure:17569: checking sys/times.h presence configure:17569: gcc -E conftest.c configure:17569: $? = 0 configure:17569: result: yes configure:17569: checking for sys/times.h configure:17569: result: yes configure:17581: checking malloc.h usability configure:17581: gcc -c -g -O2 conftest.c >&5 conftest.c:66:10: fatal error: 'malloc.h' file not found #include ^ 1 error generated. configure:17581: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:17581: result: no configure:17581: checking malloc.h presence configure:17581: gcc -E conftest.c conftest.c:33:10: fatal error: 'malloc.h' file not found #include ^ 1 error generated. configure:17581: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | /* end confdefs.h. */ | #include configure:17581: result: no configure:17581: checking for malloc.h configure:17581: result: no configure:17593: checking glob.h usability configure:17593: gcc -c -g -O2 conftest.c >&5 configure:17593: $? = 0 configure:17593: result: yes configure:17593: checking glob.h presence configure:17593: gcc -E conftest.c configure:17593: $? = 0 configure:17593: result: yes configure:17593: checking for glob.h configure:17593: result: yes configure:17605: checking fnmatch.h usability configure:17605: gcc -c -g -O2 conftest.c >&5 configure:17605: $? = 0 configure:17605: result: yes configure:17605: checking fnmatch.h presence configure:17605: gcc -E conftest.c configure:17605: $? = 0 configure:17605: result: yes configure:17605: checking for fnmatch.h configure:17605: result: yes configure:17617: checking wordexp.h usability configure:17617: gcc -c -g -O2 conftest.c >&5 configure:17617: $? = 0 configure:17617: result: yes configure:17617: checking wordexp.h presence configure:17617: gcc -E conftest.c configure:17617: $? = 0 configure:17617: result: yes configure:17617: checking for wordexp.h configure:17617: result: yes configure:17629: checking execinfo.h usability configure:17629: gcc -c -g -O2 conftest.c >&5 configure:17629: $? = 0 configure:17629: result: yes configure:17629: checking execinfo.h presence configure:17629: gcc -E conftest.c configure:17629: $? = 0 configure:17629: result: yes configure:17629: checking for execinfo.h configure:17629: result: yes configure:17643: checking for mallinfo configure:17643: gcc -o conftest -g -O2 conftest.c >&5 Undefined symbols for architecture x86_64: "_mallinfo", referenced from: _main in conftest-37ae65.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:17643: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | /* end confdefs.h. */ | /* Define mallinfo to an innocuous variant, in case declares mallinfo. | For example, HP-UX 11i declares gettimeofday. */ | #define mallinfo innocuous_mallinfo | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char mallinfo (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef mallinfo | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char mallinfo (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_mallinfo || defined __stub___mallinfo | choke me | #endif | | int | main () | { | return mallinfo (); | ; | return 0; | } configure:17643: result: no configure:17654: checking for backtrace configure:17654: gcc -o conftest -g -O2 conftest.c >&5 configure:17654: $? = 0 configure:17654: result: yes configure:17667: checking for getrlimit configure:17667: gcc -o conftest -g -O2 conftest.c >&5 configure:17667: $? = 0 configure:17667: result: yes configure:17678: checking for gethostname configure:17678: gcc -o conftest -g -O2 conftest.c >&5 configure:17678: $? = 0 configure:17678: result: yes configure:17746: checking for floor in -lm configure:17771: gcc -o conftest -g -O2 conftest.c -lm >&5 conftest.c:51:6: warning: incompatible redeclaration of library function 'floor' [-Wincompatible-library-redeclaration] char floor (); ^ conftest.c:51:6: note: 'floor' is a builtin with type 'double (double)' 1 warning generated. configure:17771: $? = 0 configure:17780: result: yes configure:17793: checking whether isnan is declared configure:17793: gcc -c -g -O2 conftest.c >&5 configure:17793: $? = 0 configure:17793: result: yes configure:17808: checking for sqrtl configure:17808: gcc -o conftest -g -O2 conftest.c -lm >&5 conftest.c:69:6: warning: incompatible redeclaration of library function 'sqrtl' [-Wincompatible-library-redeclaration] char sqrtl (); ^ conftest.c:69:6: note: 'sqrtl' is a builtin with type 'long double (long double)' 1 warning generated. configure:17808: $? = 0 configure:17808: result: yes configure:17819: checking for feenableexcept configure:17819: gcc -o conftest -g -O2 conftest.c -lm >&5 Undefined symbols for architecture x86_64: "_feenableexcept", referenced from: _main in conftest-e731b4.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:17819: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" | #define USER_NAME "sdhauban" | #define HOST_NAME "Sanitas-MacBook-Pro.local" | #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | /* end confdefs.h. */ | /* Define feenableexcept to an innocuous variant, in case declares feenableexcept. | For example, HP-UX 11i declares gettimeofday. */ | #define feenableexcept innocuous_feenableexcept | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char feenableexcept (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef feenableexcept | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char feenableexcept (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_feenableexcept || defined __stub___feenableexcept | choke me | #endif | | int | main () | { | return feenableexcept (); | ; | return 0; | } configure:17819: result: no configure:17829: checking for fenv_t.__control configure:17829: gcc -c -g -O2 conftest.c >&5 configure:17829: $? = 0 configure:17829: result: yes configure:17839: checking for fenv_t.__mxcsr configure:17839: gcc -c -g -O2 conftest.c >&5 configure:17839: $? = 0 configure:17839: result: yes configure:17862: checking for DATA support configure:17876: result: configure:18020: checking if compiler needs -Werror to reject unknown flags configure:18036: gcc -c -g -O2 -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5 configure:18036: $? = 0 configure:18037: result: yes configure:18057: checking whether pthreads work with -pthread configure:18145: gcc -o conftest -g -O2 -pthread -Werror conftest.c -lm >&5 configure:18145: $? = 0 configure:18154: result: yes configure:18173: checking for joinable pthread attribute configure:18188: gcc -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:18188: $? = 0 configure:18194: result: PTHREAD_CREATE_JOINABLE configure:18204: checking if more special flags are required for pthreads configure:18219: result: -D_THREAD_SAFE configure:18225: checking for PTHREAD_PRIO_INHERIT configure:18242: gcc -o conftest -g -O2 -pthread conftest.c -lm >&5 configure:18242: $? = 0 configure:18251: result: yes configure:18599: checking for szlib library configure:18601: result: suppressed configure:18767: checking hdf5.h usability configure:18767: gcc -c -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c >&5 configure:18767: $? = 0 configure:18767: result: yes configure:18767: checking hdf5.h presence configure:18767: gcc -E -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c configure:18767: $? = 0 configure:18767: result: yes configure:18767: checking for hdf5.h configure:18767: result: yes configure:18777: checking for library containing H5Fopen configure:18808: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lm >&5 Undefined symbols for architecture x86_64: "_H5Fopen", referenced from: _main in conftest-f9b133.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:18808: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" | #define USER_NAME "sdhauban" | #define HOST_NAME "Sanitas-MacBook-Pro.local" | #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:18808: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lhdf5 -lm >&5 configure:18808: $? = 0 configure:18825: result: -lhdf5 configure:18837: checking for library containing H5DSis_scale configure:18868: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5DSis_scale", referenced from: _main in conftest-e4b2a1.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:18868: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" | #define USER_NAME "sdhauban" | #define HOST_NAME "Sanitas-MacBook-Pro.local" | #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:18868: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lhdf5_hl -lhdf5 -lm >&5 configure:18868: $? = 0 configure:18885: result: -lhdf5_hl configure:19112: checking netcdf.h usability configure:19112: gcc -c -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c >&5 configure:19112: $? = 0 configure:19112: result: yes configure:19112: checking netcdf.h presence configure:19112: gcc -E -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c configure:19112: $? = 0 configure:19112: result: yes configure:19112: checking for netcdf.h configure:19112: result: yes configure:19122: checking for library containing nc_open configure:19153: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/netcdf/4.4.1.1_4/lib -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_nc_open", referenced from: _main in conftest-b094b1.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:19153: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" | #define USER_NAME "sdhauban" | #define HOST_NAME "Sanitas-MacBook-Pro.local" | #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:19153: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/netcdf/4.4.1.1_4/lib -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 configure:19153: $? = 0 configure:19170: result: -lnetcdf configure:19185: checking nc-config script configure:19189: checking for nc-config configure:19205: found /usr/local/Cellar/netcdf/4.4.1.1_4/bin/nc-config configure:19216: result: /usr/local/Cellar/netcdf/4.4.1.1_4/bin/nc-config configure:19225: checking netcdf's OpenDAP support configure:19231: result: yes configure:19237: checking netcdf's nc2 support configure:19244: result: yes configure:19250: checking netcdf's nc4 support configure:19257: result: yes configure:19263: checking netcdf's nc4/hdf5 support configure:19270: result: yes configure:19296: checking for library containing H5TS_mutex_lock configure:19327: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/netcdf/4.4.1.1_4/lib -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5TS_mutex_lock", referenced from: _main in conftest-86e639.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:19327: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" | #define USER_NAME "sdhauban" | #define HOST_NAME "Sanitas-MacBook-Pro.local" | #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:19327: gcc -o conftest -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include -L/usr/local/Cellar/netcdf/4.4.1.1_4/lib -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib conftest.c -lnetcdf -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lm >&5 Undefined symbols for architecture x86_64: "_H5TS_mutex_lock", referenced from: _main in conftest-690e9c.o ld: symbol(s) not found for architecture x86_64 clang: error: linker command failed with exit code 1 (use -v to see invocation) configure:19327: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.1rc2" | #define PACKAGE_STRING "cdo 1.8.1rc2" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.1rc2" | #define PACKAGE "cdo" | #define VERSION "1.8.1rc2" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_EXECINFO_H 1 | #define HAVE_BACKTRACE 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" | #define USER_NAME "sdhauban" | #define HOST_NAME "Sanitas-MacBook-Pro.local" | #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FENV_T___CONTROL 1 | #define HAVE_FENV_T___MXCSR 1 | #define ENABLE_DATA 1 | #define HAVE_PTHREAD_PRIO_INHERIT 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_LIBNC_DAP 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:19344: result: no configure:19551: checking for the UDUNITS2 library configure:19553: result: suppressed configure:19717: checking for the CMOR library configure:19719: result: suppressed configure:19899: checking for the GRIB_API library configure:19901: result: suppressed configure:19910: checking for GRIB support configure:19927: result: yes configure:19933: checking for CGRIBEX support configure:19950: result: yes configure:19956: checking for SERVICE support configure:19973: result: yes configure:19979: checking for EXTRA support configure:19996: result: yes configure:20002: checking for IEG support configure:20019: result: yes configure:20025: checking for FFTW3 support configure:20288: checking for the PROJ library configure:20290: result: suppressed configure:20470: checking for the CURL library configure:20472: result: suppressed configure:20652: checking for MAGICS library configure:20654: result: suppressed configure:20857: checking for XML2 library configure:20859: result: suppressed configure:20878: checking for build a separate CDI library and link CDO to it configure:20895: result: no configure:20919: checking for building an additional static CDO binary configure:20932: result: no configure:20944: checking for HIRLAM extensions configure:20960: result: no configure:20980: checking if x86/amd64 assembler speaks SSE4.2 configure:21003: gcc -c -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c >&5 configure:21003: $? = 0 configure:21006: result: yes configure:21031: checking if x86/amd64 assembler speaks AVX configure:21052: gcc -c -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c >&5 configure:21052: $? = 0 configure:21055: result: yes configure:21080: checking if x86/amd64 assembler speaks AVX2 configure:21101: gcc -c -g -O2 -D_THREAD_SAFE -pthread -I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include conftest.c >&5 configure:21101: $? = 0 configure:21104: result: yes configure:21138: result: no configure:21165: checking for gawk configure:21192: result: awk configure:21335: checking that generated files are newer than configure configure:21341: result: done configure:21400: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by cdo config.status 1.8.1rc2, which was generated by GNU Autoconf 2.68. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on Sanitas-MacBook-Pro.local config.status:1311: creating test/File.test config.status:1311: creating test/Read_grib.test config.status:1311: creating test/Read_netcdf.test config.status:1311: creating test/Copy_netcdf.test config.status:1311: creating test/Comp.test config.status:1311: creating test/Compc.test config.status:1311: creating test/Cat.test config.status:1311: creating test/Gridarea.test config.status:1311: creating test/Genweights.test config.status:1311: creating test/Remap.test config.status:1311: creating test/Remap2.test config.status:1311: creating test/EOF.test config.status:1311: creating test/Select.test config.status:1311: creating test/Spectral.test config.status:1311: creating test/Vertint.test config.status:1311: creating test/Timstat.test config.status:1311: creating test/Timselstat.test config.status:1311: creating test/Seasstat.test config.status:1311: creating test/Runstat.test config.status:1311: creating test/Multiyearstat.test config.status:1311: creating test/Gridboxstat.test config.status:1311: creating test/Vertstat.test config.status:1311: creating test/Fldstat.test config.status:1311: creating test/Fldpctl.test config.status:1311: creating test/Ensstat.test config.status:1311: creating test/Enspctl.test config.status:1311: creating test/Merstat.test config.status:1311: creating test/Zonstat.test config.status:1311: creating test/Afterburner.test config.status:1311: creating test/Detrend.test config.status:1311: creating test/Arithc.test config.status:1311: creating test/Arith.test config.status:1311: creating test/Expr.test config.status:1311: creating test/Gradsdes.test config.status:1311: creating test/Collgrid.test config.status:1311: creating test/threads.test config.status:1311: creating test/tsformat.test config.status:1311: creating test/wildcard.test config.status:1311: creating test/MapReduce.test config.status:1311: creating test/Ninfo.test config.status:1311: creating Makefile config.status:1311: creating src/Makefile config.status:1311: creating contrib/Makefile config.status:1311: creating test/Makefile config.status:1311: creating test/data/Makefile config.status:1311: creating cdo.spec config.status:1311: creating cdo.settings config.status:1311: creating src/config.h config.status:1540: executing depfiles commands config.status:1540: executing libtool commands configure:24053: === configuring in libcdi (/Users/sdhauban/Downloads/cdo-1.8.1rc2/libcdi) configure:24116: running /bin/sh ./configure --disable-option-checking '--prefix=/usr/local' '--with-netcdf=/usr/local/Cellar/netcdf/4.4.1.1_4' '--with-hdf5=/usr/local/Cellar/hdf5/1.10.0-patch1' --cache-file=/dev/null --srcdir=. configure:24135: CDO is configured with the following options: configure:24154: Configuration completed. You can now say 'make' to compile the CDO package and 'make install' to install it afterwards. ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-apple-darwin13.4.0 ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_backtrace=yes ac_cv_func_feenableexcept=no ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=no ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=yes ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=no ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=x86_64-apple-darwin13.4.0 ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_fenv_t___control=yes ac_cv_member_fenv_t___mxcsr=yes ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_ac_pt_BASH=/bin/sh ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AWK=awk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=/usr/local/Cellar/netcdf/4.4.1.1_4/bin/nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=false ac_cv_prog_ac_ct_DSYMUTIL=dsymutil ac_cv_prog_ac_ct_LD=/Library/Developer/CommandLineTools/usr/bin/ld ac_cv_prog_ac_ct_LIPO=lipo ac_cv_prog_ac_ct_NM=/usr/bin/nm ac_cv_prog_ac_ct_NMEDIT=nmedit ac_cv_prog_ac_ct_OBJDUMP=false ac_cv_prog_ac_ct_OTOOL=otool ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=unsupported ac_cv_prog_cc_c89= ac_cv_prog_cc_c99= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=yes lt_cv_apple_cc_single_mod=yes lt_cv_ar_at_file=no lt_cv_deplibs_check_method=pass_all lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_exported_symbols_list=yes lt_cv_ld_force_load=yes lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/Library/Developer/CommandLineTools/usr/bin/ld lt_cv_path_LDCXX=/Library/Developer/CommandLineTools/usr/bin/ld lt_cv_path_NM=/usr/bin/nm lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-fno-common -DPIC' lt_cv_prog_compiler_pic_CXX='-fno-common -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_CXX=no lt_cv_prog_gnu_ld=no lt_cv_prog_gnu_ldcxx=no lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=196608 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /Users/sdhauban/Downloads/cdo-1.8.1rc2/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /Users/sdhauban/Downloads/cdo-1.8.1rc2/config/missing autoconf' AUTOHEADER='${SHELL} /Users/sdhauban/Downloads/cdo-1.8.1rc2/config/missing autoheader' AUTOMAKE='${SHELL} /Users/sdhauban/Downloads/cdo-1.8.1rc2/config/missing automake-1.14' AWK='awk' BASH='/bin/sh' BUILD_AVX2_TESTS_FALSE='#' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='#' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='#' BUILD_SSE42_TESTS_TRUE='' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -D_THREAD_SAFE -pthread' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/local/Cellar/netcdf/4.4.1.1_4/include -I/usr/local/Cellar/hdf5/1.10.0-patch1/include ' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DLLTOOL='false' DSYMUTIL='dsymutil' DUMPBIN='' ECHO_C='\c' ECHO_N='' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='#' ENABLE_CDI_LIB='false' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='#' ENABLE_CGRIBEX='yes' ENABLE_CXX='no' ENABLE_DATA='' ENABLE_EXTRA='yes' ENABLE_GRIB='yes' ENABLE_GRIBAPI='no' ENABLE_HIRLAM_EXTENSIONS_FALSE='' ENABLE_HIRLAM_EXTENSIONS_TRUE='#' ENABLE_IEG='yes' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='#' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NETCDF='yes' ENABLE_SERVICE='yes' ENABLE_THREADS='yes' EXEEXT='' FCFLAGS='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HDF5_INCLUDE=' -I/usr/local/Cellar/hdf5/1.10.0-patch1/include' HDF5_LIBS=' -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib -lhdf5' HDF5_ROOT='/usr/local/Cellar/hdf5/1.10.0-patch1' HOST_NAME='Sanitas-MacBook-Pro.local' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/Library/Developer/CommandLineTools/usr/bin/ld' LDFLAGS='-L/usr/local/Cellar/netcdf/4.4.1.1_4/lib -L/usr/local/Cellar/hdf5/1.10.0-patch1/lib ' LIBOBJS='' LIBS='-lnetcdf -lhdf5_hl -lhdf5 -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='lipo' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /Users/sdhauban/Downloads/cdo-1.8.1rc2/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='config/install-sh -c -d' NC_CONFIG='/usr/local/Cellar/netcdf/4.4.1.1_4/bin/nc-config' NETCDF_INCLUDE=' -I/usr/local/Cellar/netcdf/4.4.1.1_4/include' NETCDF_LIBS=' -L/usr/local/Cellar/netcdf/4.4.1.1_4/lib -lnetcdf' NETCDF_ROOT='/usr/local/Cellar/netcdf/4.4.1.1_4' NM='/usr/bin/nm' NMEDIT='nmedit' OBJDUMP='false' OBJEXT='o' OPENMP_CFLAGS='' OTOOL64=':' OTOOL='otool' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.8.1rc2' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.8.1rc2' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc' PTHREAD_CFLAGS='-D_THREAD_SAFE -pthread' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='x86_64-apple-darwin13.4.0' SZLIB_INCLUDE='' SZLIB_LIBS='' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USER_NAME='sdhauban' VERSION='1.8.1rc2' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='x86_64-apple-darwin13.4.0' build_alias='' build_cpu='x86_64' build_os='darwin13.4.0' build_vendor='apple' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-apple-darwin13.4.0' host_alias='' host_cpu='x86_64' host_os='darwin13.4.0' host_vendor='apple' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /Users/sdhauban/Downloads/cdo-1.8.1rc2/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' libcdi' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.8.1rc2" #define PACKAGE_STRING "cdo 1.8.1rc2" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.8.1rc2" #define PACKAGE "cdo" #define VERSION "1.8.1rc2" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_EXECINFO_H 1 #define HAVE_BACKTRACE 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "Apple LLVM version 6.0 (clang-600.0.57) (based on LLVM 3.5svn)" #define USER_NAME "sdhauban" #define HOST_NAME "Sanitas-MacBook-Pro.local" #define SYSTEM_TYPE "x86_64-apple-darwin13.4.0" #define HAVE_LIBM 1 #define HAVE_DECL_ISNAN 1 #define HAVE_SQRTL 1 #define HAVE_FENV_T___CONTROL 1 #define HAVE_FENV_T___MXCSR 1 #define ENABLE_DATA 1 #define HAVE_PTHREAD_PRIO_INHERIT 1 #define HAVE_LIBPTHREAD 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_LIBNC_DAP 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 #define HAVE_LIBGRIB 1 #define HAVE_LIBCGRIBEX 1 #define HAVE_LIBSERVICE 1 #define HAVE_LIBEXTRA 1 #define HAVE_LIBIEG 1 #define COMPILER "gcc -g -O2 -D_THREAD_SAFE -pthread" configure: exit 0