This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by cdo configure 1.8.0rc4, which was generated by GNU Autoconf 2.68. Invocation command line was $ ./configure --with-netcdf --with-hdf5 --with-proj --with-szlib=/usr/local --with-grib_api=/usr/local/grib_api --with-fftw3 --with-curl --with-udunits --with-libxml2 ## --------- ## ## Platform. ## ## --------- ## hostname = WPNSBIO9009864 uname -m = i686 uname -r = 2.0.4(0.287/5/3) uname -s = CYGWIN_NT-6.1-WOW uname -v = 2015-06-09 12:20 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = i686 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/bin PATH: /usr/bin PATH: /cygdrive/c/ProgramData/Oracle/Java/javapath PATH: /cygdrive/c/Windows/system32 PATH: /cygdrive/c/Windows PATH: /cygdrive/c/Windows/System32/Wbem PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Program Files/MATLAB/R2012a/bin PATH: /cygdrive/c/Program Files (x86)/MATLAB/R2010bSP1/bin PATH: /cygdrive/c/Users/DeTraceyB/AppData/Local/Continuum/Anaconda PATH: /cygdrive/c/Users/DeTraceyB/AppData/Local/Continuum/Anaconda/Scripts PATH: /cygdrive/c/Program Files/snap/bin PATH: /usr/lib/lapack PATH: /usr/local/mpich2-1.4.1p1/bin PATH: /usr/local/grib_api/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:2602: checking build system type configure:2616: result: i686-pc-cygwin configure:2636: checking host system type configure:2649: result: i686-pc-cygwin configure:2688: checking for a BSD-compatible install configure:2756: result: /usr/bin/install -c configure:2767: checking whether build environment is sane configure:2822: result: yes configure:2973: checking for a thread-safe mkdir -p configure:3012: result: /usr/bin/mkdir -p configure:3019: checking for gawk configure:3035: found /usr/bin/gawk configure:3046: result: gawk configure:3057: checking whether make sets $(MAKE) configure:3079: result: yes configure:3108: checking whether make supports nested variables configure:3125: result: yes configure:3253: checking whether to enable maintainer-specific portions of Makefiles configure:3262: result: no configure:3289: checking for style of include used by make configure:3317: result: GNU configure:3388: checking for gcc configure:3404: found /usr/bin/gcc configure:3415: result: gcc configure:3644: checking for C compiler version configure:3653: gcc --version >&5 gcc (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:3664: $? = 0 configure:3653: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.9.2/lto-wrapper.exe Target: i686-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.9.2 (GCC) configure:3664: $? = 0 configure:3653: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:3664: $? = 1 configure:3653: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion' gcc: fatal error: no input files compilation terminated. configure:3664: $? = 1 configure:3684: checking whether the C compiler works configure:3706: gcc conftest.c >&5 configure:3710: $? = 0 configure:3758: result: yes configure:3761: checking for C compiler default output file name configure:3763: result: a.exe configure:3769: checking for suffix of executables configure:3776: gcc -o conftest.exe conftest.c >&5 configure:3780: $? = 0 configure:3802: result: .exe configure:3824: checking whether we are cross compiling configure:3832: gcc -o conftest.exe conftest.c >&5 configure:3836: $? = 0 configure:3843: ./conftest.exe configure:3847: $? = 0 configure:3862: result: no configure:3867: checking for suffix of object files configure:3889: gcc -c conftest.c >&5 configure:3893: $? = 0 configure:3914: result: o configure:3918: checking whether we are using the GNU C compiler configure:3937: gcc -c conftest.c >&5 configure:3937: $? = 0 configure:3946: result: yes configure:3955: checking whether gcc accepts -g configure:3975: gcc -c -g conftest.c >&5 configure:3975: $? = 0 configure:4016: result: yes configure:4033: checking for gcc option to accept ISO C89 configure:4097: gcc -c -g -O2 conftest.c >&5 configure:4097: $? = 0 configure:4110: result: none needed configure:4135: checking whether gcc understands -c and -o together configure:4157: gcc -c conftest.c -o conftest2.o configure:4160: $? = 0 configure:4157: gcc -c conftest.c -o conftest2.o configure:4160: $? = 0 configure:4172: result: yes configure:4191: checking dependency style of gcc configure:4302: result: gcc3 configure:4367: checking for ar configure:4383: found /usr/bin/ar configure:4394: result: ar configure:4420: checking the archiver (ar) interface configure:4436: gcc -c -g -O2 conftest.c >&5 configure:4436: $? = 0 configure:4438: ar cru libconftest.a conftest.o >&5 configure:4441: $? = 0 configure:4469: result: ar configure:4490: setting up libtool configure:4538: checking how to print strings configure:4565: result: printf configure:4586: checking for a sed that does not truncate output configure:4650: result: /usr/bin/sed configure:4668: checking for grep that handles long lines and -e configure:4726: result: /usr/bin/grep configure:4731: checking for egrep configure:4793: result: /usr/bin/grep -E configure:4798: checking for fgrep configure:4860: result: /usr/bin/grep -F configure:4895: checking for ld used by gcc configure:4962: result: /usr/i686-pc-cygwin/bin/ld.exe configure:4969: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld configure:4984: result: yes configure:4996: checking for BSD- or MS-compatible name lister (nm) configure:5045: result: /usr/bin/nm -B configure:5175: checking the name lister (/usr/bin/nm -B) interface configure:5182: gcc -c -g -O2 conftest.c >&5 configure:5185: /usr/bin/nm -B "conftest.o" configure:5188: output 00000000 b .bss 00000000 d .data 00000000 N .debug_abbrev 00000000 N .debug_aranges 00000000 N .debug_info 00000000 N .debug_line 00000000 r .rdata$zzz 00000000 t .text 00000000 B _some_variable configure:5195: result: BSD nm configure:5198: checking whether ln -s works configure:5202: result: yes configure:5210: checking the maximum length of command line arguments configure:5340: result: 8192 configure:5357: checking whether the shell understands some XSI constructs configure:5367: result: yes configure:5371: checking whether the shell understands "+=" configure:5377: result: yes configure:5412: checking how to convert i686-pc-cygwin file names to i686-pc-cygwin format configure:5452: result: func_convert_file_noop configure:5459: checking how to convert i686-pc-cygwin file names to toolchain format configure:5479: result: func_convert_file_noop configure:5486: checking for /usr/i686-pc-cygwin/bin/ld.exe option to reload object files configure:5493: result: -r configure:5567: checking for objdump configure:5583: found /usr/bin/objdump configure:5594: result: objdump configure:5626: checking how to recognize dependent libraries configure:5828: result: file_magic ^x86 archive import|^x86 DLL configure:5913: checking for dlltool configure:5929: found /usr/bin/dlltool configure:5940: result: dlltool configure:5973: checking how to associate runtime and link libraries configure:6000: result: func_cygming_dll_for_implib configure:6124: checking for archiver @FILE support configure:6141: gcc -c -g -O2 conftest.c >&5 configure:6141: $? = 0 configure:6144: ar cru libconftest.a @conftest.lst >&5 configure:6147: $? = 0 configure:6152: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:6155: $? = 1 configure:6167: result: @ configure:6225: checking for strip configure:6241: found /usr/bin/strip configure:6252: result: strip configure:6324: checking for ranlib configure:6340: found /usr/bin/ranlib configure:6351: result: ranlib configure:6453: checking command to parse /usr/bin/nm -B output from gcc object configure:6573: gcc -c -g -O2 conftest.c >&5 configure:6576: $? = 0 configure:6580: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6583: $? = 0 cannot find nm_test_var in conftest.nm configure:6573: gcc -c -g -O2 conftest.c >&5 configure:6576: $? = 0 configure:6580: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:6583: $? = 0 configure:6649: gcc -o conftest.exe -g -O2 conftest.c conftstm.o >&5 configure:6652: $? = 0 configure:6690: result: ok configure:6727: checking for sysroot configure:6757: result: no configure:7013: checking for mt configure:7043: result: no configure:7063: checking if : is a manifest tool configure:7069: : '-?' configure:7077: result: no configure:7719: checking how to run the C preprocessor configure:7750: gcc -E conftest.c configure:7750: $? = 0 configure:7764: gcc -E conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:7764: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | /* end confdefs.h. */ | #include configure:7789: result: gcc -E configure:7809: gcc -E conftest.c configure:7809: $? = 0 configure:7823: gcc -E conftest.c conftest.c:12:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:7823: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | /* end confdefs.h. */ | #include configure:7852: checking for ANSI C header files configure:7872: gcc -c -g -O2 conftest.c >&5 configure:7872: $? = 0 configure:7945: gcc -o conftest.exe -g -O2 conftest.c >&5 configure:7945: $? = 0 configure:7945: ./conftest.exe configure:7945: $? = 0 configure:7956: result: yes configure:7969: checking for sys/types.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for sys/stat.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for stdlib.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for string.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for memory.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for strings.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for inttypes.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for stdint.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7969: checking for unistd.h configure:7969: gcc -c -g -O2 conftest.c >&5 configure:7969: $? = 0 configure:7969: result: yes configure:7983: checking for dlfcn.h configure:7983: gcc -c -g -O2 conftest.c >&5 configure:7983: $? = 0 configure:7983: result: yes configure:8189: checking for objdir configure:8204: result: .libs configure:8475: checking if gcc supports -fno-rtti -fno-exceptions configure:8493: gcc -c -g -O2 -fno-rtti -fno-exceptions conftest.c >&5 cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C configure:8497: $? = 0 configure:8510: result: no configure:8837: checking for gcc option to produce PIC configure:8844: result: -DDLL_EXPORT -DPIC configure:8852: checking if gcc PIC flag -DDLL_EXPORT -DPIC works configure:8870: gcc -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.c >&5 configure:8874: $? = 0 configure:8887: result: yes configure:8916: checking if gcc static flag -static works configure:8944: result: yes configure:8959: checking if gcc supports -c -o file.o configure:8980: gcc -c -g -O2 -o out/conftest2.o conftest.c >&5 configure:8984: $? = 0 configure:9006: result: yes configure:9014: checking if gcc supports -c -o file.o configure:9061: result: yes configure:9094: checking whether the gcc linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:10247: result: yes configure:10284: checking whether -lc should be explicitly linked in configure:10292: gcc -c -g -O2 conftest.c >&5 configure:10295: $? = 0 configure:10310: gcc -shared conftest.o -v -o ./conftest -Wl,--enable-auto-image-base -Xlinker --out-implib -Xlinker conftest 2\>\&1 \| /usr/bin/grep -lc \>/dev/null 2\>\&1 configure:10313: $? = 1 configure:10327: result: yes configure:10487: checking dynamic linker characteristics configure:11220: result: Win32 ld.exe configure:11327: checking how to hardcode library paths into programs configure:11352: result: immediate configure:11892: checking whether stripping libraries is possible configure:11897: result: yes configure:11932: checking if libtool supports shared libraries configure:11934: result: yes configure:11937: checking whether to build shared libraries configure:11958: result: yes configure:11961: checking whether to build static libraries configure:11965: result: yes configure:12047: checking for gcc configure:12074: result: gcc configure:12139: checking for g++ configure:12155: found /usr/bin/g++ configure:12166: result: g++ configure:12188: checking for gcc option to accept ISO C99 configure:12337: gcc -c -g -O2 conftest.c >&5 conftest.c:74:29: error: expected ';', ',' or ')' before 'text' test_restrict (ccp restrict text) ^ conftest.c: In function 'main': conftest.c:128:18: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'newvar' char *restrict newvar = "Another string"; ^ conftest.c:128:18: error: 'newvar' undeclared (first use in this function) conftest.c:128:18: note: each undeclared identifier is reported only once for each function it appears in conftest.c:138:3: error: 'for' loop initial declarations are only allowed in C99 or C11 mode for (int i = 0; i < ia->datasize; ++i) ^ conftest.c:138:3: note: use option -std=c99, -std=gnu99, -std=c11 or -std=gnu11 to compile your code configure:12337: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | #include | #include | #include | #include | #include | | // Check varargs macros. These examples are taken from C99 6.10.3.5. | #define debug(...) fprintf (stderr, __VA_ARGS__) | #define showlist(...) puts (#__VA_ARGS__) | #define report(test,...) ((test) ? puts (#test) : printf (__VA_ARGS__)) | static void | test_varargs_macros (void) | { | int x = 1234; | int y = 5678; | debug ("Flag"); | debug ("X = %d\n", x); | showlist (The first, second, and third items.); | report (x>y, "x is %d but y is %d", x, y); | } | | // Check long long types. | #define BIG64 18446744073709551615ull | #define BIG32 4294967295ul | #define BIG_OK (BIG64 / BIG32 == 4294967297ull && BIG64 % BIG32 == 0) | #if !BIG_OK | your preprocessor is broken; | #endif | #if BIG_OK | #else | your preprocessor is broken; | #endif | static long long int bignum = -9223372036854775807LL; | static unsigned long long int ubignum = BIG64; | | struct incomplete_array | { | int datasize; | double data[]; | }; | | struct named_init { | int number; | const wchar_t *name; | double average; | }; | | typedef const char *ccp; | | static inline int | test_restrict (ccp restrict text) | { | // See if C++-style comments work. | // Iterate through items via the restricted pointer. | // Also check for declarations in for loops. | for (unsigned int i = 0; *(text+i) != '\0'; ++i) | continue; | return 0; | } | | // Check varargs and va_copy. | static void | test_varargs (const char *format, ...) | { | va_list args; | va_start (args, format); | va_list args_copy; | va_copy (args_copy, args); | | const char *str; | int number; | float fnumber; | | while (*format) | { | switch (*format++) | { | case 's': // string | str = va_arg (args_copy, const char *); | break; | case 'd': // int | number = va_arg (args_copy, int); | break; | case 'f': // float | fnumber = va_arg (args_copy, double); | break; | default: | break; | } | } | va_end (args_copy); | va_end (args); | } | | int | main () | { | | // Check bool. | _Bool success = false; | | // Check restrict. | if (test_restrict ("String literal") == 0) | success = true; | char *restrict newvar = "Another string"; | | // Check varargs. | test_varargs ("s, d' f .", "string", 65, 34.234); | test_varargs_macros (); | | // Check flexible array members. | struct incomplete_array *ia = | malloc (sizeof (struct incomplete_array) + (sizeof (double) * 10)); | ia->datasize = 10; | for (int i = 0; i < ia->datasize; ++i) | ia->data[i] = i * 1.234; | | // Check named initializers. | struct named_init ni = { | .number = 34, | .name = L"Test wide string", | .average = 543.34343, | }; | | ni.number = 58; | | int dynamic_array[ni.number]; | dynamic_array[ni.number - 1] = 543; | | // work around unused variable warnings | return (!success || bignum == 0LL || ubignum == 0uLL || newvar[0] == 'x' | || dynamic_array[ni.number - 1] != 543); | | ; | return 0; | } configure:12337: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:12337: $? = 0 configure:12357: result: -std=gnu99 configure:12366: checking for C/C++ restrict keyword configure:12391: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:12391: $? = 0 configure:12399: result: __restrict configure:12420: checking for gcc -std=gnu99 option to support OpenMP configure:12435: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 conftest.c:27:2: error: unknown type name 'choke' choke me ^ In file included from conftest.c:29:0: /usr/lib/gcc/i686-pc-cygwin/4.9.2/include/omp.h:34:1: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef' typedef struct ^ configure:12435: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | | #ifndef _OPENMP | choke me | #endif | #include | int main () { return omp_get_num_threads (); } | configure:12452: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c >&5 configure:12452: $? = 0 configure:12466: result: -fopenmp configure:12520: checking for ar configure:12547: result: ar configure:12704: checking for ld configure:12731: result: /usr/i686-pc-cygwin/bin/ld.exe configure:12796: checking for nm configure:12823: result: /usr/bin/nm -B configure:12888: checking for ar configure:12915: result: ar configure:12980: checking for as configure:12996: found /usr/bin/as configure:13007: result: as configure:13072: checking for dlltool configure:13099: result: dlltool configure:13164: checking for objdump configure:13191: result: objdump configure:13256: checking for strip configure:13283: result: strip configure:13348: checking for ranlib configure:13375: result: ranlib configure:13510: checking for C++ compiler version configure:13519: g++ --version >&5 g++ (GCC) 4.9.2 Copyright (C) 2014 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:13530: $? = 0 configure:13519: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/i686-pc-cygwin/4.9.2/lto-wrapper.exe Target: i686-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-4.9.2-3.i686/src/gcc-4.9.2 --prefix=/usr --exec-prefix=/usr --bindir=/usr/bin --sbindir=/usr/sbin --libexecdir=/usr/libexec --datadir=/usr/share --localstatedir=/var --sysconfdir=/etc --libdir=/usr/lib --datarootdir=/usr/share --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=i686-pc-cygwin --host=i686-pc-cygwin --target=i686-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-arch=i686 --with-tune=generic --disable-sjlj-exceptions --enable-languages=ada,c,c++,fortran,java,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libgomp --disable-libitm --enable-libquadmath --enable-libquadmath-support --enable-libssp --enable-libada --enable-libjava --enable-libgcj-sublibs --disable-java-awt --disable-symvers --with-ecj-jar=/usr/share/java/ecj.jar --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id Thread model: posix gcc version 4.9.2 (GCC) configure:13530: $? = 0 configure:13519: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:13530: $? = 1 configure:13519: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion' g++: fatal error: no input files compilation terminated. configure:13530: $? = 1 configure:13534: checking whether we are using the GNU C++ compiler configure:13553: g++ -c conftest.cpp >&5 configure:13553: $? = 0 configure:13562: result: yes configure:13571: checking whether g++ accepts -g configure:13591: g++ -c -g conftest.cpp >&5 configure:13591: $? = 0 configure:13632: result: yes configure:13657: checking dependency style of g++ configure:13768: result: gcc3 configure:13801: checking how to run the C++ preprocessor configure:13828: g++ -E conftest.cpp configure:13828: $? = 0 configure:13842: g++ -E conftest.cpp conftest.cpp:25:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:13842: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:13867: result: g++ -E configure:13887: g++ -E conftest.cpp configure:13887: $? = 0 configure:13901: g++ -E conftest.cpp conftest.cpp:25:28: fatal error: ac_nonexistent.h: No such file or directory #include ^ compilation terminated. configure:13901: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | /* end confdefs.h. */ | #include configure:14070: checking for ld used by g++ configure:14137: result: /usr/i686-pc-cygwin/bin/ld.exe configure:14144: checking if the linker (/usr/i686-pc-cygwin/bin/ld.exe) is GNU ld configure:14159: result: yes configure:14214: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:15219: result: yes configure:15255: g++ -c -g -O2 conftest.cpp >&5 configure:15258: $? = 0 configure:15778: checking for g++ option to produce PIC configure:15785: result: -DDLL_EXPORT -DPIC configure:15793: checking if g++ PIC flag -DDLL_EXPORT -DPIC works configure:15811: g++ -c -g -O2 -DDLL_EXPORT -DPIC -DPIC conftest.cpp >&5 configure:15815: $? = 0 configure:15828: result: yes configure:15851: checking if g++ static flag -static works configure:15879: result: yes configure:15891: checking if g++ supports -c -o file.o configure:15912: g++ -c -g -O2 -o out/conftest2.o conftest.cpp >&5 configure:15916: $? = 0 configure:15938: result: yes configure:15943: checking if g++ supports -c -o file.o configure:15990: result: yes configure:16020: checking whether the g++ linker (/usr/i686-pc-cygwin/bin/ld.exe) supports shared libraries configure:16056: result: yes configure:16197: checking dynamic linker characteristics configure:16864: result: Win32 ld.exe configure:16917: checking how to hardcode library paths into programs configure:16942: result: immediate configure:16994: checking for special C compiler options needed for large files configure:17039: result: no configure:17045: checking for _FILE_OFFSET_BITS value needed for large files configure:17070: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17070: $? = 0 configure:17102: result: no configure:17193: checking for stdlib.h configure:17193: result: yes configure:17193: checking for unistd.h configure:17193: result: yes configure:17193: checking for sys/param.h configure:17193: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17193: $? = 0 configure:17193: result: yes configure:17213: checking for getpagesize configure:17213: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:17213: $? = 0 configure:17213: result: yes configure:17222: checking for working mmap configure:17369: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:17369: $? = 0 configure:17369: ./conftest.exe configure:17369: $? = 0 configure:17379: result: yes configure:17390: checking for malloc in -lmalloc configure:17415: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lmalloc >&5 conftest.c:37:6: warning: conflicting types for built-in function 'malloc' char malloc (); ^ /usr/lib/gcc/i686-pc-cygwin/4.9.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lmalloc collect2: error: ld returned 1 exit status configure:17415: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc (); | int | main () | { | return malloc (); | ; | return 0; | } configure:17424: result: no configure:17437: checking for struct stat.st_blksize configure:17437: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17437: $? = 0 configure:17437: result: yes configure:17451: checking sys/resource.h usability configure:17451: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17451: $? = 0 configure:17451: result: yes configure:17451: checking sys/resource.h presence configure:17451: gcc -E conftest.c configure:17451: $? = 0 configure:17451: result: yes configure:17451: checking for sys/resource.h configure:17451: result: yes configure:17463: checking sys/times.h usability configure:17463: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17463: $? = 0 configure:17463: result: yes configure:17463: checking sys/times.h presence configure:17463: gcc -E conftest.c configure:17463: $? = 0 configure:17463: result: yes configure:17463: checking for sys/times.h configure:17463: result: yes configure:17475: checking malloc.h usability configure:17475: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17475: $? = 0 configure:17475: result: yes configure:17475: checking malloc.h presence configure:17475: gcc -E conftest.c configure:17475: $? = 0 configure:17475: result: yes configure:17475: checking for malloc.h configure:17475: result: yes configure:17487: checking glob.h usability configure:17487: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17487: $? = 0 configure:17487: result: yes configure:17487: checking glob.h presence configure:17487: gcc -E conftest.c configure:17487: $? = 0 configure:17487: result: yes configure:17487: checking for glob.h configure:17487: result: yes configure:17499: checking fnmatch.h usability configure:17499: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17499: $? = 0 configure:17499: result: yes configure:17499: checking fnmatch.h presence configure:17499: gcc -E conftest.c configure:17499: $? = 0 configure:17499: result: yes configure:17499: checking for fnmatch.h configure:17499: result: yes configure:17511: checking wordexp.h usability configure:17511: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17511: $? = 0 configure:17511: result: yes configure:17511: checking wordexp.h presence configure:17511: gcc -E conftest.c configure:17511: $? = 0 configure:17511: result: yes configure:17511: checking for wordexp.h configure:17511: result: yes configure:17523: checking execinfo.h usability configure:17523: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c:70:22: fatal error: execinfo.h: No such file or directory #include ^ compilation terminated. configure:17523: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:17523: result: no configure:17523: checking execinfo.h presence configure:17523: gcc -E conftest.c conftest.c:37:22: fatal error: execinfo.h: No such file or directory #include ^ compilation terminated. configure:17523: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | /* end confdefs.h. */ | #include configure:17523: result: no configure:17523: checking for execinfo.h configure:17523: result: no configure:17537: checking for mallinfo configure:17537: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:17537: $? = 0 configure:17537: result: yes configure:17548: checking for backtrace configure:17548: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 /tmp/cclmC5SL.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:72: undefined reference to `backtrace' collect2: error: ld returned 1 exit status configure:17548: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | /* end confdefs.h. */ | /* Define backtrace to an innocuous variant, in case declares backtrace. | For example, HP-UX 11i declares gettimeofday. */ | #define backtrace innocuous_backtrace | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char backtrace (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef backtrace | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char backtrace (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_backtrace || defined __stub___backtrace | choke me | #endif | | int | main () | { | return backtrace (); | ; | return 0; | } configure:17548: result: no configure:17561: checking for getrlimit configure:17561: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:17561: $? = 0 configure:17561: result: yes configure:17572: checking for gethostname configure:17572: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c >&5 configure:17572: $? = 0 configure:17572: result: yes configure:17640: checking for floor in -lm configure:17665: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 conftest.c:51:6: warning: conflicting types for built-in function 'floor' char floor (); ^ configure:17665: $? = 0 configure:17674: result: yes configure:17687: checking whether isnan is declared configure:17687: gcc -std=gnu99 -c -g -O2 conftest.c >&5 configure:17687: $? = 0 configure:17687: result: yes configure:17702: checking for sqrtl configure:17702: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 conftest.c:69:6: warning: conflicting types for built-in function 'sqrtl' char sqrtl (); ^ configure:17702: $? = 0 configure:17702: result: yes configure:17713: checking for feenableexcept configure:17713: gcc -std=gnu99 -o conftest.exe -g -O2 conftest.c -lm >&5 configure:17713: $? = 0 configure:17713: result: yes configure:17723: checking for fenv_t.__control configure:17723: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:54:12: error: 'fenv_t' has no member named '__control' if (ac_aggr.__control) ^ configure:17723: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__control) | return 0; | ; | return 0; | } configure:17723: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:54:19: error: 'fenv_t' has no member named '__control' if (sizeof ac_aggr.__control) ^ configure:17723: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__control) | return 0; | ; | return 0; | } configure:17723: result: no configure:17733: checking for fenv_t.__mxcsr configure:17733: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:54:12: error: 'fenv_t' has no member named '__mxcsr' if (ac_aggr.__mxcsr) ^ configure:17733: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (ac_aggr.__mxcsr) | return 0; | ; | return 0; | } configure:17733: gcc -std=gnu99 -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:54:19: error: 'fenv_t' has no member named '__mxcsr' if (sizeof ac_aggr.__mxcsr) ^ configure:17733: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | /* end confdefs.h. */ | #include | | int | main () | { | static fenv_t ac_aggr; | if (sizeof ac_aggr.__mxcsr) | return 0; | ; | return 0; | } configure:17733: result: no configure:17756: checking for DATA support configure:17770: result: configure:17914: checking if compiler needs -Werror to reject unknown flags configure:17930: gcc -std=gnu99 -c -g -O2 -fopenmp -Werror -Wunknown-warning-option -Wsizeof-array-argument conftest.c >&5 gcc: error: unrecognized command line option '-Wunknown-warning-option' gcc: error: unrecognized command line option '-Wsizeof-array-argument' configure:17930: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | int foo(void); | int | main () | { | foo() | ; | return 0; | } configure:17935: result: no configure:18001: checking for the pthreads library -lpthreads configure:18039: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lpthreads -lm >&5 /usr/lib/gcc/i686-pc-cygwin/4.9.2/../../../../i686-pc-cygwin/bin/ld: cannot find -lpthreads collect2: error: ld returned 1 exit status configure:18039: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | static void routine(void *a) { a = 0; } | static void *start_routine(void *a) { return a; } | int | main () | { | pthread_t th; pthread_attr_t attr; | pthread_create(&th, 0, start_routine, 0); | pthread_join(th, 0); | pthread_attr_init(&attr); | pthread_cleanup_push(routine, 0); | pthread_cleanup_pop(0) /* ; */ | ; | return 0; | } configure:18048: result: no configure:17946: checking whether pthreads work without any flags configure:18039: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lm >&5 configure:18039: $? = 0 configure:18048: result: yes configure:18067: checking for joinable pthread attribute configure:18082: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lm >&5 configure:18082: $? = 0 configure:18088: result: PTHREAD_CREATE_JOINABLE configure:18098: checking if more special flags are required for pthreads configure:18113: result: no configure:18119: checking for PTHREAD_PRIO_INHERIT configure:18136: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp conftest.c -lm >&5 conftest.c: In function 'main': conftest.c:53:9: error: 'PTHREAD_PRIO_INHERIT' undeclared (first use in this function) int i = PTHREAD_PRIO_INHERIT; ^ conftest.c:53:9: note: each undeclared identifier is reported only once for each function it appears in configure:18136: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | /* end confdefs.h. */ | #include | int | main () | { | int i = PTHREAD_PRIO_INHERIT; | ; | return 0; | } configure:18145: result: no configure:18413: checking szlib.h usability configure:18413: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:18413: $? = 0 configure:18413: result: yes configure:18413: checking szlib.h presence configure:18413: gcc -E -I/usr/local/include conftest.c configure:18413: $? = 0 configure:18413: result: yes configure:18413: checking for szlib.h configure:18413: result: yes configure:18423: checking for library containing SZ_BufftoBuffCompress configure:18454: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lm >&5 /tmp/ccctd9B6.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:62: undefined reference to `SZ_BufftoBuffCompress' collect2: error: ld returned 1 exit status configure:18454: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char SZ_BufftoBuffCompress (); | int | main () | { | return SZ_BufftoBuffCompress (); | ; | return 0; | } configure:18454: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lsz -lm >&5 configure:18454: $? = 0 configure:18471: result: -lsz configure:18518: checking hdf5.h usability configure:18518: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:18518: $? = 0 configure:18518: result: yes configure:18518: checking hdf5.h presence configure:18518: gcc -E -I/usr/local/include conftest.c configure:18518: $? = 0 configure:18518: result: yes configure:18518: checking for hdf5.h configure:18518: result: yes configure:18528: checking for library containing H5Fopen configure:18559: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lsz -lm >&5 /tmp/cc4uF898.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:64: undefined reference to `H5Fopen' collect2: error: ld returned 1 exit status configure:18559: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5Fopen (); | int | main () | { | return H5Fopen (); | ; | return 0; | } configure:18559: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5 -lsz -lm >&5 configure:18559: $? = 0 configure:18576: result: -lhdf5 configure:18588: checking for library containing H5DSis_scale configure:18619: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5 -lsz -lm >&5 /tmp/ccVuWidI.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:65: undefined reference to `H5DSis_scale' collect2: error: ld returned 1 exit status configure:18619: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5DSis_scale (); | int | main () | { | return H5DSis_scale (); | ; | return 0; | } configure:18619: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lm >&5 configure:18619: $? = 0 configure:18636: result: -lhdf5_hl configure:18835: checking netcdf.h usability configure:18835: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/include conftest.c >&5 configure:18835: $? = 0 configure:18835: result: yes configure:18835: checking netcdf.h presence configure:18835: gcc -E -I/usr/local/include conftest.c configure:18835: $? = 0 configure:18835: result: yes configure:18835: checking for netcdf.h configure:18835: result: yes configure:18845: checking for library containing nc_open configure:18876: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccmyq3yM.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:66: undefined reference to `nc_open' collect2: error: ld returned 1 exit status configure:18876: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char nc_open (); | int | main () | { | return nc_open (); | ; | return 0; | } configure:18876: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 configure:18876: $? = 0 configure:18893: result: -lnetcdf configure:18909: checking for nc-config configure:18925: found /usr/bin/nc-config configure:18936: result: nc-config configure:18945: checking netcdf's nc2 support configure:18952: result: yes configure:18958: checking netcdf's nc4 support configure:18965: result: yes configure:18971: checking netcdf's nc4/hdf5 support configure:18978: result: yes configure:19178: checking for library containing H5TS_mutex_lock configure:19209: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccOssxKd.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:70: undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:19209: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:19209: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/include -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/ccvxIXQ1.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:70: undefined reference to `H5TS_mutex_lock' collect2: error: ld returned 1 exit status configure:19209: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char H5TS_mutex_lock (); | int | main () | { | return H5TS_mutex_lock (); | ; | return 0; | } configure:19226: result: no configure:19433: checking for the UDUNITS2 library configure:19435: result: suppressed configure:19599: checking for the CMOR library configure:19601: result: suppressed configure:19701: checking grib_api.h usability configure:19701: gcc -std=gnu99 -c -g -O2 -fopenmp -I/usr/local/grib_api/include -I/usr/local/include conftest.c >&5 configure:19701: $? = 0 configure:19701: result: yes configure:19701: checking grib_api.h presence configure:19701: gcc -E -I/usr/local/grib_api/include -I/usr/local/include conftest.c configure:19701: $? = 0 configure:19701: result: yes configure:19701: checking for grib_api.h configure:19701: result: yes configure:19711: checking for library containing grib_get_message configure:19742: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/grib_api/include -I/usr/local/include -L/usr/local/grib_api/lib -L/usr/local/lib conftest.c -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /tmp/cc5HcbYR.o: In function `main': /usr/src/cdo-1.8.0rc4/conftest.c:71: undefined reference to `grib_get_message' collect2: error: ld returned 1 exit status configure:19742: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:19742: gcc -std=gnu99 -o conftest.exe -g -O2 -fopenmp -I/usr/local/grib_api/include -I/usr/local/include -L/usr/local/grib_api/lib -L/usr/local/lib conftest.c -lgrib_api -lnetcdf -lhdf5_hl -lhdf5 -lsz -lm >&5 /usr/local/grib_api/lib/libgrib_api.a(grib_jasper_encoding.o): In function `grib_jasper_decode': /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:35: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:41: undefined reference to `jpc_decode' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:55: undefined reference to `jas_matrix_create' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:62: undefined reference to `jas_image_readcmpt' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:73: undefined reference to `jas_matrix_destroy' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:74: undefined reference to `jas_image_destroy' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:75: undefined reference to `jas_stream_close' /usr/local/grib_api/lib/libgrib_api.a(grib_jasper_encoding.o): In function `grib_jasper_encode': /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:165: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:168: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:169: undefined reference to `jpc_encode' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:191: undefined reference to `jas_stream_close' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:192: undefined reference to `jas_stream_close' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:175: undefined reference to `jas_stream_close' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:176: undefined reference to `jas_stream_close' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:178: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:180: undefined reference to `jas_stream_memopen' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:181: undefined reference to `jpc_encode' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:196: undefined reference to `jas_stream_close' /usr/src/grib_api-1.13.1/src/grib_jasper_encoding.c:197: undefined reference to `jas_stream_close' collect2: error: ld returned 1 exit status configure:19742: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "cdo" | #define PACKAGE_TARNAME "cdo" | #define PACKAGE_VERSION "1.8.0rc4" | #define PACKAGE_STRING "cdo 1.8.0rc4" | #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" | #define PACKAGE_URL "" | #define CDO "1.8.0rc4" | #define PACKAGE "cdo" | #define VERSION "1.8.0rc4" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define restrict __restrict | #define HAVE_STDLIB_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_MMAP 1 | #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIMES_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_GLOB_H 1 | #define HAVE_FNMATCH_H 1 | #define HAVE_WORDEXP_H 1 | #define HAVE_MALLINFO 1 | #define HAVE_GETRLIMIT 1 | #define HAVE_GETHOSTNAME 1 | #define COMP_VERSION "gcc (GCC) 4.9.2" | #define USER_NAME "detraceyb" | #define HOST_NAME "WPNSBIO9009864" | #define SYSTEM_TYPE "i686-pc-cygwin" | #define HAVE_LIBM 1 | #define HAVE_DECL_ISNAN 1 | #define HAVE_SQRTL 1 | #define HAVE_FEENABLEEXCEPT 1 | #define ENABLE_DATA 1 | #define HAVE_LIBPTHREAD 1 | #define HAVE_SZLIB_H 1 | #define HAVE_LIBSZ 1 | #define HAVE_HDF5_H 1 | #define HAVE_LIBHDF5 1 | #define HAVE_NETCDF_H 1 | #define HAVE_LIBNETCDF 1 | #define HAVE_NETCDF2 1 | #define HAVE_NETCDF4 1 | #define HAVE_NC4HDF5 1 | #define HAVE_GRIB_API_H 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char grib_get_message (); | int | main () | { | return grib_get_message (); | ; | return 0; | } configure:19759: result: no configure:19769: error: Could not link to grib_api library ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=i686-pc-cygwin ac_cv_c_compiler_gnu=yes ac_cv_c_restrict=__restrict ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext=.exe ac_cv_func_backtrace=no ac_cv_func_feenableexcept=yes ac_cv_func_gethostname=yes ac_cv_func_getpagesize=yes ac_cv_func_getrlimit=yes ac_cv_func_mallinfo=yes ac_cv_func_mmap_fixed_mapped=yes ac_cv_func_sqrtl=yes ac_cv_have_decl_isnan=yes ac_cv_header_dlfcn_h=yes ac_cv_header_execinfo_h=no ac_cv_header_fnmatch_h=yes ac_cv_header_glob_h=yes ac_cv_header_grib_api_h=yes ac_cv_header_hdf5_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_netcdf_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_times_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_szlib_h=yes ac_cv_header_unistd_h=yes ac_cv_header_wordexp_h=yes ac_cv_host=i686-pc-cygwin ac_cv_lib_m_floor=yes ac_cv_lib_malloc_malloc=no ac_cv_member_fenv_t___control=no ac_cv_member_fenv_t___mxcsr=no ac_cv_member_struct_stat_st_blksize=yes ac_cv_objext=o ac_cv_path_EGREP='/usr/bin/grep -E' ac_cv_path_FGREP='/usr/bin/grep -F' ac_cv_path_GREP=/usr/bin/grep ac_cv_path_SED=/usr/bin/sed ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/usr/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_NC_CONFIG=nc-config ac_cv_prog_ac_ct_AR=ar ac_cv_prog_ac_ct_AS=as ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_DLLTOOL=dlltool ac_cv_prog_ac_ct_LD=/usr/i686-pc-cygwin/bin/ld.exe ac_cv_prog_ac_ct_NM='/usr/bin/nm -B' ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_c_openmp=-fopenmp ac_cv_prog_cc_c89= ac_cv_prog_cc_c99=-std=gnu99 ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_make_make_set=yes ac_cv_search_H5DSis_scale=-lhdf5_hl ac_cv_search_H5Fopen=-lhdf5 ac_cv_search_H5TS_mutex_lock=no ac_cv_search_SZ_BufftoBuffCompress=-lsz ac_cv_search_grib_get_message=no ac_cv_search_nc_open=-lnetcdf ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_ar_interface=ar am_cv_make_support_nested_variables=yes am_cv_prog_cc_c_o=yes ax_cv_PTHREAD_PRIO_INHERIT=no lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=yes lt_cv_deplibs_check_method='file_magic ^x86 archive import|^x86 DLL' lt_cv_file_magic_cmd=func_win32_libid lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/usr/i686-pc-cygwin/bin/ld.exe lt_cv_path_LDCXX=/usr/i686-pc-cygwin/bin/ld.exe lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_CXX=yes lt_cv_prog_compiler_pic='-DDLL_EXPORT -DPIC' lt_cv_prog_compiler_pic_CXX='-DDLL_EXPORT -DPIC' lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_CXX=yes lt_cv_prog_compiler_rtti_exceptions=no lt_cv_prog_compiler_static_works=yes lt_cv_prog_compiler_static_works_CXX=yes lt_cv_prog_gnu_ld=yes lt_cv_prog_gnu_ldcxx=yes lt_cv_sharedlib_from_linklib_cmd=func_cygming_dll_for_implib lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=8192 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /usr/src/cdo-1.8.0rc4/config/missing aclocal-1.14' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CPPFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='1' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /usr/src/cdo-1.8.0rc4/config/missing autoconf' AUTOHEADER='${SHELL} /usr/src/cdo-1.8.0rc4/config/missing autoheader' AUTOMAKE='${SHELL} /usr/src/cdo-1.8.0rc4/config/missing automake-1.14' AWK='gawk' BUILD_AVX2_TESTS_FALSE='' BUILD_AVX2_TESTS_TRUE='' BUILD_AVX_TESTS_FALSE='' BUILD_AVX_TESTS_TRUE='' BUILD_SSE42_TESTS_FALSE='' BUILD_SSE42_TESTS_TRUE='' CC='gcc -std=gnu99' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2 -fopenmp ' CLDFLAGS='' CLIBS='' CMOR_LIBS='' CPP='gcc -E' CPPFLAGS='-I/usr/local/grib_api/include -I/usr/local/include ' CURL_INCLUDE='' CURL_LDFLAGS='' CXX='g++' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='-g -O2' CYGPATH_W='cygpath -w' DEFS='' DEPDIR='.deps' DLLTOOL='dlltool' DSYMUTIL='' DUMPBIN='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/usr/bin/grep -E' ENABLE_ALL_STATIC_FALSE='' ENABLE_ALL_STATIC_TRUE='' ENABLE_CDI_LIB='' ENABLE_CDI_LIB_FALSE='' ENABLE_CDI_LIB_TRUE='' ENABLE_CGRIBEX='' ENABLE_CXX='' ENABLE_DATA='' ENABLE_EXTRA='' ENABLE_GRIB='' ENABLE_GRIBAPI='no' ENABLE_IEG='' ENABLE_MAGICS_FALSE='' ENABLE_MAGICS_TRUE='' ENABLE_NC2='yes' ENABLE_NC4='yes' ENABLE_NC4HDF5='yes' ENABLE_NETCDF='yes' ENABLE_SERVICE='' ENABLE_THREADS='yes' EXEEXT='.exe' FCFLAGS='' FGREP='/usr/bin/grep -F' GREP='/usr/bin/grep' GRIB_API_INCLUDE='' GRIB_API_LIBS='' HDF5_INCLUDE='' HDF5_LIBS=' -lhdf5' HDF5_ROOT='' HOST_NAME='WPNSBIO9009864' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' LD='/usr/i686-pc-cygwin/bin/ld.exe' LDFLAGS='-L/usr/local/grib_api/lib -L/usr/local/lib ' LIBOBJS='' LIBS='-lnetcdf -lhdf5_hl -lhdf5 -lsz -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LN_S='ln -s' LTLIBOBJS='' MAGICS_INCLUDE='' MAGICS_LIBS='' MAGICS_ROOT='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /usr/src/cdo-1.8.0rc4/config/missing makeinfo' MANIFEST_TOOL=':' MKDIR_P='/usr/bin/mkdir -p' NC_CONFIG='nc-config' NETCDF_INCLUDE='' NETCDF_LIBS=' -lnetcdf' NETCDF_ROOT='' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJEXT='o' OPENMP_CFLAGS='-fopenmp' OTOOL64='' OTOOL='' PACKAGE='cdo' PACKAGE_BUGREPORT='http://mpimet.mpg.de/cdo' PACKAGE_NAME='cdo' PACKAGE_STRING='cdo 1.8.0rc4' PACKAGE_TARNAME='cdo' PACKAGE_URL='' PACKAGE_VERSION='1.8.0rc4' PATH_SEPARATOR=':' PROJ_INCLUDE='' PROJ_LDFLAGS='' PTHREAD_CC='gcc -std=gnu99' PTHREAD_CFLAGS='' PTHREAD_LIBS='' RANLIB='ranlib' SED='/usr/bin/sed' SET_MAKE='' SHELL='/bin/sh' STRIP='strip' SYSTEM_TYPE='i686-pc-cygwin' SZLIB_INCLUDE=' -I/usr/local/include' SZLIB_LIBS=' -L/usr/local/lib -lsz' THREADS_INCLUDE='' THREADS_LIBS='' UDUNITS_INCLUDE='' UDUNITS_LDFLAGS='' USER_NAME='detraceyb' VERSION='1.8.0rc4' XML2_LIBS='' ac_ct_AR='ar' ac_ct_CC='gcc' ac_ct_CXX='g++' ac_ct_DUMPBIN='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' ax_pthread_config='' bindir='${exec_prefix}/bin' build='i686-pc-cygwin' build_alias='' build_cpu='i686' build_os='cygwin' build_vendor='pc' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='NONE' host='i686-pc-cygwin' host_alias='' host_cpu='i686' host_os='cygwin' host_vendor='pc' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /usr/src/cdo-1.8.0rc4/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs='' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "cdo" #define PACKAGE_TARNAME "cdo" #define PACKAGE_VERSION "1.8.0rc4" #define PACKAGE_STRING "cdo 1.8.0rc4" #define PACKAGE_BUGREPORT "http://mpimet.mpg.de/cdo" #define PACKAGE_URL "" #define CDO "1.8.0rc4" #define PACKAGE "cdo" #define VERSION "1.8.0rc4" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define restrict __restrict #define HAVE_STDLIB_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_GETPAGESIZE 1 #define HAVE_MMAP 1 #define HAVE_STRUCT_STAT_ST_BLKSIZE 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIMES_H 1 #define HAVE_MALLOC_H 1 #define HAVE_GLOB_H 1 #define HAVE_FNMATCH_H 1 #define HAVE_WORDEXP_H 1 #define HAVE_MALLINFO 1 #define HAVE_GETRLIMIT 1 #define HAVE_GETHOSTNAME 1 #define COMP_VERSION "gcc (GCC) 4.9.2" #define USER_NAME "detraceyb" #define HOST_NAME "WPNSBIO9009864" #define SYSTEM_TYPE "i686-pc-cygwin" #define HAVE_LIBM 1 #define HAVE_DECL_ISNAN 1 #define HAVE_SQRTL 1 #define HAVE_FEENABLEEXCEPT 1 #define ENABLE_DATA 1 #define HAVE_LIBPTHREAD 1 #define HAVE_SZLIB_H 1 #define HAVE_LIBSZ 1 #define HAVE_HDF5_H 1 #define HAVE_LIBHDF5 1 #define HAVE_NETCDF_H 1 #define HAVE_LIBNETCDF 1 #define HAVE_NETCDF2 1 #define HAVE_NETCDF4 1 #define HAVE_NC4HDF5 1 #define HAVE_GRIB_API_H 1 configure: exit 1